Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32655 Brassica carinata HOM05D010390 ORTHO05D012282 4.8e-51 204.1 99 100.0
BcaB07g32656 Brassica carinata HOM05D010390 ORTHO05D012282 1.6e-22 109.4 56 94.6
BolC5t31674H Brassica oleracea HOM05D010390 ORTHO05D012282 1.7e-16 89.4 56 76.8
C05p29440 Brassica napus HOM05D001466 ORTHO05D001452 3.9e-16 88.2 54 77.8
A09p35990 Brassica napus HOM05D010390 ORTHO05D012282 6.6e-16 87.4 56 75.0
BraA09t39123Z Brassica rapa HOM05D001466 ORTHO05D001452 1.5e-15 86.3 54 75.9
Sp1g26300 Schrenkiella parvula HOM05D010390 ORTHO05D012282 4.3e-15 84.7 56 71.4
C07p37250 Brassica napus HOM05D010390 ORTHO05D012282 2.1e-14 82.4 56 71.4
BolC7t44235H Brassica oleracea HOM05D010390 ORTHO05D012282 2.1e-14 82.4 56 71.4
Carub.0001s2868 Capsella rubella HOM05D010390 ORTHO05D012282 2.0e-12 75.9 57 56.1
Thhalv10009879m.g Eutrema salsugineum HOM05D010390 ORTHO05D012282 3.4e-12 75.1 57 59.6
AT1G30473 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 4.9e-11 71.2 57 54.4
AL7G29470 Arabidopsis lyrata HOM05D010390 ORTHO05D012282 1.1e-10 70.1 56 55.4
AT4G23882 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 1.1e-10 70.1 56 55.4
Aa31LG1G15860 Aethionema arabicum HOM05D010390 ORTHO05D012282 4.1e-10 68.2 61 49.2
BolC8t52932H Brassica oleracea HOM05D000489 ORTHO05D012282 7.1e-10 67.4 60 50.0
Carub.0007s1724 Capsella rubella HOM05D010390 ORTHO05D012282 3.5e-09 65.1 53 54.7
CARHR231270 Cardamine hirsuta HOM05D010390 ORTHO05D012282 3.5e-09 65.1 58 51.7
A09p69400 Brassica napus HOM05D000489 ORTHO05D000372 4.6e-09 64.7 54 51.9
BraA04t18955Z Brassica rapa HOM05D000489 ORTHO05D000372 4.6e-09 64.7 54 51.9
A04p35220 Brassica napus HOM05D000489 ORTHO05D000372 7.8e-09 63.9 54 51.9
Atru.chr5.1357 Acer truncatum HOM05D000520 ORTHO05D010368 3.0e-08 62.0 59 44.1
Potri.004G144200 Populus trichocarpa HOM05D010143 ORTHO05D010368 1.1e-07 60.1 54 48.1
QL12p022735 Quercus lobata HOM05D010143 ORTHO05D010368 1.5e-07 59.7 49 51.0
A03p34030 Brassica napus HOM05D000520 ORTHO05D012153 1.9e-07 59.3 63 47.6
BraA03t12577Z Brassica rapa HOM05D000520 ORTHO05D012153 1.9e-07 59.3 63 47.6
THA.LOC104802224 Tarenaya hassleriana HOM05D010390 ORTHO05D012282 1.9e-07 59.3 50 56.0
Sc09g0003280 Simmondsia chinensis HOM05D000520 ORTHO05D000399 5.6e-07 57.8 74 41.9
Peaxi162Scf00037g00123 Petunia axillaris HOM05D000520 ORTHO05D000399 9.5e-07 57.0 53 50.9
AL3G15650 Arabidopsis lyrata HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
BcaB04g19277 Brassica carinata HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
BcaB04g21451 Brassica carinata HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
BNapus_Darmor_BZH_scaffold_114p00230 Brassica napus HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
C03p41430 Brassica napus HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
BolC1t05705H Brassica oleracea HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
BraSC132t45515Z Brassica rapa HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
Carub.0003s0447 Capsella rubella HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
CARHR079560 Cardamine hirsuta HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
Thhalv10020397m.g Eutrema salsugineum HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 1.6e-06 56.2 54 50.0
Sp3g04070 Schrenkiella parvula HOM05D000520 ORTHO05D012153 1.6e-06 56.2 56 48.2
Aa31LG5G15600 Aethionema arabicum HOM05D000520 ORTHO05D012153 2.1e-06 55.8 56 48.2
AT3G05220 Arabidopsis thaliana HOM05D000520 ORTHO05D012153 2.1e-06 55.8 56 46.4
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 2.1e-06 55.8 54 50.0
CSS0042599 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 2.8e-06 55.5 76 42.1
CSS0050336 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 2.8e-06 55.5 76 42.1
CAN.G1132.7 Capsicum annuum HOM05D000520 ORTHO05D000399 2.8e-06 55.5 53 50.9
Duzib128G1162 Durio zibethinus HOM05D000520 ORTHO05D000399 2.8e-06 55.5 53 50.9
Aqoxy2G03274 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 3.6e-06 55.1 56 46.4
BcaC05g30010 Brassica carinata HOM05D000520 ORTHO05D012153 3.6e-06 55.1 56 46.4
A05p42360 Brassica napus HOM05D000520 ORTHO05D012153 3.6e-06 55.1 56 46.4
C05p61970 Brassica napus HOM05D000520 ORTHO05D012153 3.6e-06 55.1 56 46.4
BolC5t34857H Brassica oleracea HOM05D000520 ORTHO05D012153 3.6e-06 55.1 56 46.4
BraA05t23015Z Brassica rapa HOM05D000520 ORTHO05D012153 3.6e-06 55.1 56 46.4
Dinv23967 Davidia involucrata HOM05D001853 ORTHO05D000399 3.6e-06 55.1 81 39.5
Nitab4.5_0001643g0070 Nicotiana tabacum HOM05D000520 ORTHO05D000399 3.6e-06 55.1 56 46.4
Actinidia24975 Actinidia chinensis HOM05D000520 ORTHO05D000399 4.7e-06 54.7 53 49.1
CSS0027010 Camellia sinensis var. sinensis HOM05D030391 ORTHO05D010368 4.7e-06 54.7 56 44.6
Glyma.15G104400 Glycine max HOM05D000520 ORTHO05D000399 4.7e-06 54.7 56 46.4
Sabra04G0095800 Salix brachista HOM05D010143 ORTHO05D010368 4.7e-06 54.7 52 46.2
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 4.7e-06 54.7 58 44.8
Glyma.13G208400 Glycine max HOM05D000520 ORTHO05D000399 6.2e-06 54.3 56 46.4
CAN.G274.23 Capsicum annuum HOM05D000520 ORTHO05D000399 8.1e-06 53.9 56 46.4
MELO3C015336.2 Cucumis melo HOM05D000520 ORTHO05D000399 8.1e-06 53.9 57 43.9
Duzib106G1970 Durio zibethinus HOM05D000520 ORTHO05D000399 8.1e-06 53.9 53 49.1
Hma1.2p1_1362F.1_g278200 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 8.1e-06 53.9 54 46.3
Lj3C779T2 Lonicera japonica HOM05D000520 ORTHO05D000399 8.1e-06 53.9 77 40.3
Nitab4.5_0002031g0100 Nicotiana tabacum HOM05D000520 ORTHO05D000399 8.1e-06 53.9 53 49.1
Oeu042784.1 Olea europaea HOM05D000520 ORTHO05D000399 8.1e-06 53.9 56 46.4
Potri.001G326100 Populus trichocarpa HOM05D014780 ORTHO05D010368 8.1e-06 53.9 58 41.4
Sabra13G0026500 Salix brachista HOM05D000520 ORTHO05D000399 8.1e-06 53.9 53 47.2
THA.LOC104818680 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 8.1e-06 53.9 56 46.4
TAR362G0969 Trochodendron aralioides HOM05D000520 ORTHO05D000399 8.1e-06 53.9 53 49.1


User provided reference genes

Program Settings