Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 1.8e-180 637.1 812 100.0
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.3e-146 524.6 818 89.9
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 1.6e-144 517.7 818 89.5
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 2.4e-140 503.8 815 90.2
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 7.0e-140 502.3 815 90.1
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 7.0e-140 502.3 815 90.1
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 1.2e-134 485.0 821 87.3
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 2.2e-133 480.7 824 87.9
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 3.6e-120 436.8 824 85.4
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.2e-116 423.3 819 82.4
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 7.3e-113 412.5 818 84.5
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.2e-110 405.2 822 75.2
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 2.0e-102 377.9 799 85.1
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 2.8e-96 357.5 261 73.6
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.8e-96 357.5 261 73.6
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 3.1e-95 354.0 219 83.1
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 2.2e-77 294.7 815 75.2
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 7.5e-57 226.5 257 51.0
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 5.3e-55 220.3 225 61.3
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 9.1e-55 219.5 172 68.6
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 1.0e-53 216.1 236 60.2
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 5.0e-53 213.8 245 55.1
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 8.5e-53 213.0 147 72.8
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.1e-52 212.6 201 64.2
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 1.5e-52 212.2 209 57.4
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 2.5e-52 211.5 269 50.9
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.2e-52 210.7 151 63.6
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 9.4e-52 209.5 269 50.9
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 2.1e-51 208.4 265 51.3
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 1.4e-50 205.7 209 56.0
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 1.4e-50 205.7 264 53.4
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 3.0e-50 204.5 139 71.9
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 3.0e-50 204.5 151 62.9
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 3.0e-50 204.5 177 60.5
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 6.8e-50 203.4 151 66.9
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 8.8e-50 203.0 151 67.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 8.8e-50 203.0 179 66.5
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.2e-49 202.6 178 59.0
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.5e-49 202.2 151 66.2
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 3.4e-49 201.1 169 59.2
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 4.4e-49 200.7 251 47.8
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 4.4e-49 200.7 151 65.6
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 5.7e-49 200.3 130 74.6
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.7e-48 198.7 206 61.2
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 2.2e-48 198.4 222 54.1
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 2.8e-48 198.0 125 76.0
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 3.7e-48 197.6 214 51.9
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 3.7e-48 197.6 149 66.4
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 4.8e-48 197.2 151 61.6
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 4.8e-48 197.2 151 63.6
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 4.8e-48 197.2 165 61.2
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 6.3e-48 196.8 196 56.1
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.8e-47 195.3 128 71.9
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 2.4e-47 194.9 135 71.1
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 3.1e-47 194.5 126 73.8
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.1e-47 194.5 267 45.7
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 5.4e-47 193.7 131 72.5
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.6e-46 192.2 129 72.1
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.6e-46 192.2 129 72.1
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.7e-46 191.4 148 65.5
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.7e-46 191.4 180 56.1
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.5e-46 191.0 129 71.3
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 5.9e-46 190.3 129 71.3
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.9e-46 190.3 129 71.3
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 5.9e-46 190.3 198 61.6
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 5.9e-46 190.3 177 56.5
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 2.9e-45 188.0 148 60.1
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 6.5e-45 186.8 129 70.5
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.9e-44 185.3 129 68.2
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.9e-44 185.3 129 68.2
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.9e-44 185.3 129 68.2
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 2.5e-44 184.9 267 48.3
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 3.3e-44 184.5 153 62.1
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 3.3e-44 184.5 148 62.8
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 5.5e-44 183.7 256 45.7
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 7.2e-44 183.3 124 72.6
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 9.5e-44 183.0 258 49.6
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 1.2e-43 182.6 122 72.1
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.6e-43 182.2 148 62.8
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 4.7e-43 180.6 124 71.0
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 4.7e-43 180.6 241 46.5
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 6.1e-43 180.3 151 57.0
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 1.4e-42 179.1 264 47.7
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 1.8e-42 178.7 151 59.6
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 2.3e-42 178.3 149 59.1
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 3.0e-42 177.9 122 72.1
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 4.0e-42 177.6 131 67.2
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 8.9e-42 176.4 109 78.9
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.2e-41 176.0 156 57.7
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 3.4e-41 174.5 177 53.7
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 4.4e-41 174.1 255 50.2
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 4.4e-41 174.1 180 52.8
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 4.4e-41 174.1 127 66.1
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 9.8e-41 172.9 120 79.2
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 9.8e-41 172.9 131 66.4
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.2e-40 171.8 269 44.2
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 4.9e-40 170.6 124 67.7
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 8.3e-40 169.9 122 88.5
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 2.3e-37 161.8 145 60.0
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 2.5e-36 158.3 127 58.3
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.6e-35 155.6 233 44.2
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 2.8e-35 154.8 136 57.4
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 4.0e-34 151.0 97 74.2
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 2.6e-33 148.3 108 63.9
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 2.4e-31 141.7 109 64.2
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 3.5e-30 137.9 152 49.3
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 5.0e-29 134.0 109 61.5
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 8.6e-29 133.3 127 57.5
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 8.6e-29 133.3 110 71.8
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 9.5e-28 129.8 104 60.6
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 1.6e-27 129.0 126 54.8
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 5.2e-26 124.0 107 72.9
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 5.8e-25 120.6 88 87.5
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 7.5e-25 120.2 106 56.6
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.7e-24 119.0 109 52.3
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.9e-24 118.2 100 58.0
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 3.7e-24 117.9 77 75.3
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 4.9e-24 117.5 115 53.0
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.6e-22 112.5 154 44.8
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.7e-22 111.7 80 66.2
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 3.0e-21 108.2 109 65.1
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 6.8e-18 97.1 111 46.8
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 2.4e-15 88.6 65 61.5
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 7.8e-14 83.6 72 56.9
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 2.3e-13 82.0 61 62.3
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.5e-12 78.6 67 58.2
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 4.7e-11 74.3 82 45.1
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 4.7e-11 74.3 49 75.5
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 1.4e-10 72.8 59 62.7
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 6.8e-10 70.5 120 31.7
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 9.9e-09 66.6 55 61.8
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 8.4e-08 63.5 135 30.4
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 3.2e-07 61.6 104 33.7
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 5.4e-07 60.8 116 31.9
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 9.2e-07 60.1 118 30.5
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 1.2e-06 59.7 120 31.7
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 2.1e-06 58.9 120 29.2
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 3.5e-06 58.2 140 25.0
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 4.6e-06 57.8 98 45.9
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 6.0e-06 57.4 116 30.2
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 6.0e-06 57.4 105 35.2
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 6.0e-06 57.4 116 30.2
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 6.0e-06 57.4 138 31.2
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 6.0e-06 57.4 116 30.2


User provided reference genes

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