Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 7.3e-44 180.3 97 100.0
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 7.6e-41 170.2 97 93.8
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 2.9e-40 168.3 98 94.9
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 2.9e-40 168.3 98 94.9
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 1.4e-39 166.0 98 93.9
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.9e-39 165.6 98 92.9
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 2.4e-31 138.7 97 80.4
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 9.3e-31 136.7 97 79.4
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 1.8e-29 132.5 92 81.5
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 1.8e-29 132.5 92 81.5
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 3.0e-29 131.7 97 79.4
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 5.1e-29 131.0 92 80.4
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 6.2e-27 124.0 99 79.8
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 1.8e-26 122.5 97 76.3
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 8.4e-24 113.6 98 73.5
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 8.7e-21 103.6 99 67.7
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 1.5e-20 102.8 97 66.0
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 3.5e-14 81.6 99 57.6
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.8e-11 72.0 74 56.8
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.8e-11 71.2 56 62.5
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 6.3e-11 70.9 52 76.9
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.4e-10 69.7 74 59.5
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 1.4e-10 69.7 55 72.7
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 6.9e-10 67.4 97 46.4
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 9.0e-10 67.0 59 62.7
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 9.0e-10 67.0 98 45.9
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 9.0e-10 67.0 74 59.5
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 9.0e-10 67.0 54 63.0
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 9.0e-10 67.0 93 50.5
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.2e-09 66.6 94 47.9
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 1.2e-09 66.6 94 47.9
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 1.2e-09 66.6 86 51.2
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.2e-09 66.6 73 58.9
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 2.0e-09 65.9 81 49.4
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 2.0e-09 65.9 46 67.4
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 2.6e-09 65.5 68 57.4
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 2.6e-09 65.5 68 57.4
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.6e-09 65.5 68 57.4
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 3.4e-09 65.1 75 57.3
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.4e-09 65.1 94 51.1
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 4.5e-09 64.7 79 49.4
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.5e-09 64.7 94 48.9
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 5.9e-09 64.3 50 62.0
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 5.9e-09 64.3 52 61.5
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 7.6e-09 63.9 50 64.0
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 1.0e-08 63.5 46 65.2
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 1.0e-08 63.5 75 49.3
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.0e-08 63.5 39 76.9
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.3e-08 63.2 49 63.3
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.3e-08 63.2 65 53.8
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.3e-08 63.2 65 53.8
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.3e-08 63.2 111 42.3
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.7e-08 62.8 96 43.8
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.7e-08 62.8 98 48.0
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.7e-08 62.8 74 56.8
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 1.7e-08 62.8 45 68.9
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 1.7e-08 62.8 45 62.2
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.2e-08 62.4 70 54.3
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 2.9e-08 62.0 73 50.7
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 2.9e-08 62.0 48 60.4
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 2.9e-08 62.0 48 60.4
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 2.9e-08 62.0 75 48.0
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 2.9e-08 62.0 39 74.4
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.9e-08 62.0 50 60.0
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 3.8e-08 61.6 93 50.5
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 3.8e-08 61.6 75 57.3
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.8e-08 61.6 74 56.8
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.8e-08 61.6 74 56.8
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.8e-08 61.6 61 62.3
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 3.8e-08 61.6 97 41.2
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 5.0e-08 61.2 71 52.1
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 6.5e-08 60.8 50 70.0
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 8.5e-08 60.5 74 50.0
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 8.5e-08 60.5 48 58.3
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 8.5e-08 60.5 81 45.7
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 8.5e-08 60.5 53 54.7
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 72 51.4
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 42 66.7
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 69 49.3
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.1e-07 60.1 82 47.6
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 1.1e-07 60.1 74 47.3
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.1e-07 60.1 56 57.1
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.4e-07 59.7 76 53.9
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 1.4e-07 59.7 48 58.3
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.9e-07 59.3 76 47.4
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.9e-07 59.3 61 60.7
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 1.9e-07 59.3 48 56.2
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.9e-07 59.3 50 62.0
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 1.9e-07 59.3 75 54.7
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 2.5e-07 58.9 79 44.3
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 2.5e-07 58.9 71 52.1
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.5e-07 58.9 74 55.4
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.5e-07 58.9 74 55.4
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 2.5e-07 58.9 97 43.3
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 2.5e-07 58.9 97 43.3
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 3.2e-07 58.5 79 45.6
Aa31LG6G3080 Aethionema arabicum HOM05D012071 ORTHO05D013970 4.2e-07 58.2 44 70.5
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 4.2e-07 58.2 97 43.3
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.2e-07 58.2 68 47.1
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 4.2e-07 58.2 73 50.7
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 5.5e-07 57.8 73 52.1
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 5.5e-07 57.8 53 60.4
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 7.2e-07 57.4 104 43.3
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 7.2e-07 57.4 48 62.5
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.3e-07 57.0 99 41.4
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 9.3e-07 57.0 69 44.9
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 9.3e-07 57.0 49 59.2
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 1.2e-06 56.6 38 71.1
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 1.6e-06 56.2 41 65.9
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.6e-06 56.2 57 61.4
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.6e-06 56.2 57 61.4
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.6e-06 56.2 57 61.4
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 2.1e-06 55.8 74 47.3
AT4G21060 Arabidopsis thaliana HOM05D000777 ORTHO05D000595 2.7e-06 55.5 41 73.2
CARHR227630 Cardamine hirsuta HOM05D012071 ORTHO05D013970 2.7e-06 55.5 41 73.2
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 2.7e-06 55.5 72 50.0
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.7e-06 55.5 97 36.1
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 2.7e-06 55.5 73 46.6
BcaC09g51267 Brassica carinata HOM05D012071 ORTHO05D013970 3.6e-06 55.1 39 76.9
BcaNung04703 Brassica carinata HOM05D012071 ORTHO05D013970 3.6e-06 55.1 39 76.9
A01p12410 Brassica napus HOM05D000777 ORTHO05D000595 3.6e-06 55.1 39 76.9
A03p52620 Brassica napus HOM05D012071 ORTHO05D013970 3.6e-06 55.1 39 76.9
C01p14990 Brassica napus HOM05D012071 ORTHO05D013970 3.6e-06 55.1 39 76.9
C07p51060 Brassica napus HOM05D012071 ORTHO05D013970 3.6e-06 55.1 39 76.9
BolC1t01447H Brassica oleracea HOM05D000777 ORTHO05D000595 3.6e-06 55.1 39 76.9
BraA01t01187Z Brassica rapa HOM05D000777 ORTHO05D000595 3.6e-06 55.1 39 76.9
BraA03t14336Z Brassica rapa HOM05D012071 ORTHO05D013970 3.6e-06 55.1 39 76.9
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.6e-06 55.1 88 39.8
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 4.6e-06 54.7 98 37.8


User provided reference genes

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