Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1541.9 809 100.0
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 0.0e+00 1328.5 820 86.7
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1323.5 820 86.5
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1321.6 820 86.5
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1320.4 820 86.2
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1320.1 821 86.2
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 0.0e+00 1225.7 834 79.5
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1195.3 828 79.2
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 0.0e+00 1192.9 830 78.7
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 0.0e+00 1187.2 835 78.3
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1187.2 835 78.2
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 0.0e+00 1184.9 835 78.0
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 0.0e+00 1166.4 836 77.0
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 0.0e+00 1155.2 834 75.9
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 0.0e+00 1137.1 837 74.7
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 0.0e+00 1122.1 850 73.3
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 0.0e+00 1085.5 837 73.2
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.2e-267 926.8 606 81.5
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 5.6e-254 881.3 847 59.6
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 9.5e-254 880.6 839 61.3
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.8e-183 647.1 784 47.8
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.4e-180 637.5 660 53.6
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 7.7e-179 631.7 867 44.5
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 2.2e-178 630.2 673 52.9
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.5e-174 617.5 808 45.7
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.7e-173 614.0 669 51.4
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.8e-173 613.2 760 47.5
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 4.8e-173 612.5 818 45.1
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.1e-172 611.3 818 45.1
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.1e-172 608.2 670 51.2
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.0e-170 604.7 670 51.0
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.7e-170 604.0 850 44.2
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.5e-170 602.1 649 51.3
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 2.1e-168 597.0 677 49.8
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.6e-168 596.3 670 50.4
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 4.4e-166 589.3 813 44.6
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 7.4e-166 588.6 758 45.5
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 8.2e-165 585.1 767 46.2
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.0e-163 580.5 651 50.1
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.6e-163 580.1 662 48.9
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.0e-162 578.2 652 51.1
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 2.2e-162 577.0 786 45.0
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.1e-161 574.7 797 45.3
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 9.4e-161 571.6 830 43.5
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.4e-159 567.8 836 43.9
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 5.2e-159 565.8 814 44.1
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.2e-158 564.7 836 42.2
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.0e-158 563.9 836 42.2
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 7.5e-158 562.0 836 42.2
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 3.7e-157 559.7 659 48.3
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 4.8e-157 559.3 798 42.9
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 4.1e-156 556.2 664 48.5
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 7.0e-156 555.4 650 47.2
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 5.9e-155 552.4 750 44.0
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 3.8e-154 549.7 660 48.3
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 6.5e-154 548.9 662 48.6
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 1.9e-153 547.4 670 48.7
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.5e-153 545.8 838 42.1
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.2e-152 544.7 664 46.7
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.7e-152 543.5 664 48.2
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 3.6e-152 543.1 839 42.0
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 6.1e-152 542.3 763 44.8
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 4.0e-151 539.7 651 46.4
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.2e-150 538.1 653 46.9
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 3.4e-150 536.6 844 41.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 3.4e-150 536.6 819 41.3
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 5.7e-150 535.8 820 42.2
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.7e-149 534.3 833 42.1
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.7e-149 534.3 827 41.1
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.2e-149 533.9 814 42.5
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.8e-149 533.5 775 43.4
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 3.7e-149 533.1 773 44.5
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 1.8e-148 530.8 808 41.3
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 3.1e-148 530.0 816 41.4
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 7.0e-148 528.9 808 41.1
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 9.1e-148 528.5 656 47.3
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 9.1e-148 528.5 818 41.7
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 4.5e-147 526.2 802 41.8
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 1.7e-146 524.2 796 42.8
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.0e-143 515.0 877 40.0
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.4e-143 514.6 809 40.4
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.8e-143 514.2 673 45.2
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 1.5e-142 511.1 574 49.0
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 4.4e-142 509.6 761 44.2
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 7.5e-142 508.8 835 41.2
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.1e-140 505.0 622 47.7
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 7.0e-140 502.3 657 44.7
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.2e-139 501.5 678 44.0
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 3.5e-139 500.0 717 43.5
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 7.8e-139 498.8 878 39.1
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 4.3e-137 493.0 810 40.2
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 7.3e-137 492.3 669 45.1
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 2.8e-136 490.3 674 43.6
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.4e-134 483.0 537 50.1
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 8.3e-133 478.8 657 43.1
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.6e-131 474.6 742 41.4
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.0e-130 471.9 648 44.9
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.7e-130 471.1 645 44.5
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 6.2e-128 462.6 731 40.5
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.0e-126 457.6 672 41.2
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 5.8e-126 456.1 649 43.5
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 4.6e-123 446.4 863 37.8
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.8e-120 437.2 662 41.4
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.3e-119 434.1 670 41.5
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 3.6e-112 410.2 645 39.4
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.0e-111 406.8 653 39.8
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.5e-110 404.8 653 39.8
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.2e-109 401.0 682 38.9
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.3e-105 387.1 644 39.9
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.3e-105 387.1 644 39.9
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 4.2e-100 370.2 677 36.2
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.5e-97 361.7 448 46.9
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.1e-96 357.8 691 34.2
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.9e-90 337.0 424 48.6
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 5.1e-90 336.7 550 40.9
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 8.7e-90 335.9 355 52.1
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.1e-89 335.5 420 48.1
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 6.2e-88 329.7 651 36.6
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 7.6e-86 322.8 601 39.3
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.9e-81 308.1 516 39.3
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 1.1e-79 302.4 699 33.5
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.6e-78 297.7 555 38.2
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.8e-77 293.9 655 32.1
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.8e-77 293.9 655 32.1
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.8e-77 293.9 566 37.3
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.5e-76 291.2 339 48.1
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.9e-68 265.0 790 28.6
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.9e-68 265.0 275 50.5
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 1.4e-63 248.8 246 54.1
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 6.9e-63 246.5 753 28.8
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.1e-57 229.2 430 38.4
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.9e-53 214.5 225 52.0
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 5.5e-52 210.3 271 49.1
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 8.0e-51 206.5 145 74.5
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.4e-47 194.9 446 32.7
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.0e-45 189.5 330 37.3
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-42 178.7 108 83.3
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 3.0e-42 177.9 108 82.4
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.6e-41 174.9 195 49.2
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 4.8e-40 170.6 123 73.2
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.1e-39 169.5 679 26.7
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 3.2e-36 157.9 142 54.9
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 2.1e-35 155.2 139 56.8
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 3.6e-35 154.5 345 34.2
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.0e-34 151.4 218 45.0
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.8e-33 146.4 153 50.3
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 1.7e-32 145.6 82 84.1
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 3.7e-32 144.4 87 80.5
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 2.4e-31 141.7 82 82.9
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 2.4e-31 141.7 82 82.9
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 1.6e-30 139.0 82 81.7
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.6e-30 139.0 265 37.4
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.1e-28 132.9 268 35.8
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 1.1e-28 132.9 117 58.1
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 4.2e-28 131.0 72 87.5
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 9.5e-28 129.8 72 86.1
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 2.3e-26 125.2 240 35.4
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.0e-26 124.4 180 40.0
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.0e-26 124.4 248 39.1
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 1.2e-25 122.9 140 47.1
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.6e-25 121.7 282 33.7
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.3e-24 119.4 233 38.2
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 2.2e-24 118.6 253 34.4
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 4.9e-24 117.5 121 52.1
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.2e-23 114.8 338 30.8
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.6e-22 112.5 151 41.7
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.2e-19 102.8 182 37.4
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 4.7e-19 100.9 132 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 3.7e-16 91.3 129 38.0
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.5e-14 84.7 98 51.0
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.3e-13 82.8 178 35.4
Aa31LG6G5510 Aethionema arabicum HOM05D003594 ORTHO05D004268 5.0e-13 80.9 77 58.4
AL1G44190 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.9e-12 79.0 110 46.4
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 2.8e-11 75.1 90 47.8
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 6.2e-11 73.9 90 47.8
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 8.1e-11 73.6 110 41.8
BcaB08g34815 Brassica carinata HOM05D003594 ORTHO05D004268 1.8e-10 72.4 44 77.3
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 5.2e-10 70.9 95 44.2
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 1.2e-09 69.7 81 49.4
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.2e-09 69.7 80 48.8
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 2.0e-09 68.9 94 45.7
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.7e-08 64.7 75 42.7


User provided reference genes

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