Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.5e-46 189.1 92 100.0
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 4.4e-30 134.4 89 75.3
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 4.4e-30 134.4 89 75.3
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 4.4e-30 134.4 89 75.3
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 4.4e-30 134.4 89 75.3
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 4.4e-30 134.4 89 75.3
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 4.4e-30 134.4 89 75.3
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.1e-28 129.8 89 71.9
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.4e-28 129.4 89 71.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 2.4e-28 128.6 87 72.4
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.6e-27 125.9 87 71.3
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.3e-26 122.9 85 70.6
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.3e-26 122.9 85 70.6
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.3e-26 122.9 85 68.2
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 1.7e-26 122.5 85 70.6
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 1.7e-26 122.5 85 70.6
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 1.7e-26 122.5 85 70.6
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 3.8e-26 121.3 89 67.4
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.9e-25 119.0 85 67.1
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.9e-25 119.0 85 67.1
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 5.2e-23 110.9 89 62.9
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 1.2e-22 109.8 89 60.7
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.6e-22 108.6 89 60.7
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 3.4e-22 108.2 89 60.7
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 5.7e-22 107.5 92 59.8
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.3e-21 106.3 85 62.4
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.8e-21 105.1 88 59.1
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 2.8e-21 105.1 89 58.4
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 3.7e-21 104.8 89 58.4
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 4.8e-21 104.4 89 58.4
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 6.3e-21 104.0 89 56.2
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 8.3e-21 103.6 89 58.4
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 8.3e-21 103.6 89 57.3
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-20 102.4 89 55.1
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-20 102.4 89 55.1
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.4e-20 102.1 89 55.1
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.4e-20 102.1 89 57.3
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.1e-20 101.7 89 57.3
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.4e-20 100.9 89 56.2
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 7.0e-20 100.5 87 56.3
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 7.0e-20 100.5 83 60.2
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 7.0e-20 100.5 87 58.6
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 9.1e-20 100.1 89 56.2
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 9.1e-20 100.1 87 55.2
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 9.1e-20 100.1 89 52.8
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 9.1e-20 100.1 86 55.8
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 9.1e-20 100.1 83 60.2
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.2e-19 99.8 89 55.1
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.2e-19 99.8 86 53.5
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.6e-19 99.4 89 55.1
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-19 99.4 85 54.1
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 1.6e-19 99.4 89 55.1
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.0e-19 99.0 85 55.3
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.0e-19 99.0 85 55.3
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 2.0e-19 99.0 86 52.3
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 2.0e-19 99.0 89 56.2
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.0e-19 99.0 89 51.7
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.0e-19 99.0 86 52.3
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 2.7e-19 98.6 89 56.2
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.7e-19 98.6 89 56.2
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.5e-19 97.8 89 51.7
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 4.5e-19 97.8 86 52.3
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 4.5e-19 97.8 86 51.2
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 4.5e-19 97.8 89 55.1
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 4.5e-19 97.8 91 54.9
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 5.9e-19 97.4 89 53.9
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 7.7e-19 97.1 83 57.8
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.0e-18 96.7 90 53.3
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.0e-18 96.7 87 55.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.0e-18 96.7 89 55.1
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.3e-18 96.3 89 50.6
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.3e-18 96.3 86 50.0
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.3e-18 96.3 86 50.0
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.3e-18 96.3 84 53.6
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.3e-18 96.3 86 50.0
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.3e-18 96.3 86 53.5
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.7e-18 95.9 89 53.9
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.7e-18 95.9 86 53.5
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.7e-18 95.9 89 53.9
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 2.2e-18 95.5 85 52.9
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.2e-18 95.5 86 53.5
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 2.9e-18 95.1 90 48.9
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 2.9e-18 95.1 85 52.9
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.9e-18 95.1 87 54.0
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 3.8e-18 94.7 86 50.0
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 5.0e-18 94.4 87 54.0
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 5.0e-18 94.4 86 51.2
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.0e-18 94.4 89 53.9
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 8.5e-18 93.6 87 52.9
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 8.5e-18 93.6 87 52.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.1e-17 93.2 87 54.0
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.1e-17 93.2 86 53.5
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.5e-17 92.8 83 51.8
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.5e-17 92.8 83 51.8
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.5e-17 92.8 83 51.8
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 3.2e-17 91.7 86 52.3
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 2.1e-16 89.0 86 51.2
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 2.8e-16 88.6 89 50.6
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 4.7e-16 87.8 84 46.4
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 6.1e-16 87.4 84 56.0
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 8.0e-16 87.0 89 47.2
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.0e-15 86.7 81 53.1
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.0e-15 86.7 86 47.7
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.4e-15 86.3 84 54.8
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 4.0e-15 84.7 86 45.3
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-14 83.2 75 54.7
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 2.0e-14 82.4 79 53.2
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.0e-14 82.4 87 46.0
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 2.6e-14 82.0 79 53.2
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.6e-14 82.0 79 51.9
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.6e-14 82.0 79 51.9
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 7.5e-14 80.5 87 44.8
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.3e-13 79.7 83 51.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 2.2e-13 79.0 83 45.8
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 2.2e-13 79.0 79 53.2
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.8e-13 78.6 79 44.3
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 8.3e-13 77.0 90 44.4
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 7.8e-11 70.5 66 53.0
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.0e-10 70.1 79 45.6
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.3e-10 69.7 79 48.1
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.7e-10 69.3 50 62.0
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-09 66.6 88 46.6
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.9e-09 65.9 90 42.2
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-09 65.1 89 40.4
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 4.3e-09 64.7 89 40.4
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 3.6e-08 61.6 84 47.6
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 3.4e-06 55.1 78 43.6


User provided reference genes

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