Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.3e-49 199.5 107 100.0
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 3.3e-45 184.9 107 92.5
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 3.3e-45 184.9 107 92.5
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 5.6e-45 184.1 107 93.5
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 5.6e-45 184.1 107 93.5
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 5.6e-45 184.1 107 93.5
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 2.9e-41 171.8 107 86.0
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-40 169.9 107 86.0
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.1e-40 169.9 107 86.0
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.1e-39 165.6 108 86.1
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.1e-39 165.6 108 86.1
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.1e-39 165.6 108 86.1
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.5e-39 164.9 107 84.1
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.7e-38 162.5 108 83.3
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 8.6e-38 160.2 107 82.2
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 1.5e-37 159.5 108 82.4
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 4.3e-37 157.9 107 83.2
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 6.2e-36 154.1 107 79.4
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 6.2e-36 154.1 107 79.4
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 6.2e-36 154.1 107 79.4
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 6.2e-36 154.1 107 79.4
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 6.2e-36 154.1 107 79.4
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 6.2e-36 154.1 109 79.8
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 4.0e-35 151.4 108 79.6
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 1.9e-24 115.9 109 63.3
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 5.3e-19 97.8 73 64.4
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.7e-14 80.9 104 45.2
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.9e-13 79.3 95 47.4
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.5e-13 79.0 104 46.2
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 4.3e-13 78.2 103 46.6
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 4.3e-13 78.2 98 45.9
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 5.6e-13 77.8 107 43.0
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.3e-12 76.6 98 45.9
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.3e-12 76.6 102 46.1
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.8e-12 75.5 63 58.7
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 4.8e-12 74.7 63 54.0
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 6.2e-12 74.3 100 49.0
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 8.2e-12 73.9 104 42.3
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.4e-11 73.2 98 43.9
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.8e-11 72.8 104 43.3
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 3.1e-11 72.0 96 49.0
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 3.1e-11 72.0 99 46.5
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.1e-11 72.0 99 46.5
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.1e-11 72.0 100 48.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.1e-11 72.0 100 48.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 3.1e-11 72.0 107 40.2
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.1e-11 72.0 92 44.6
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 4.0e-11 71.6 102 48.0
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 4.0e-11 71.6 92 45.7
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 5.3e-11 71.2 95 44.2
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 6.9e-11 70.9 98 42.9
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 6.9e-11 70.9 99 46.5
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 9.0e-11 70.5 99 45.5
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.2e-10 70.1 99 45.5
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.2e-10 70.1 99 45.5
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.2e-10 70.1 104 43.3
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 1.5e-10 69.7 96 42.7
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.5e-10 69.7 99 44.4
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.0e-10 69.3 105 45.7
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 2.0e-10 69.3 103 44.7
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.4e-10 68.6 59 54.2
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 4.5e-10 68.2 97 43.3
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 4.5e-10 68.2 100 46.0
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 4.5e-10 68.2 100 46.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 4.5e-10 68.2 103 41.7
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.8e-10 67.8 97 39.2
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 7.6e-10 67.4 97 44.3
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 7.6e-10 67.4 102 40.2
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 7.6e-10 67.4 98 43.9
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 7.6e-10 67.4 98 43.9
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.7e-09 66.2 99 45.5
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.2e-09 65.9 99 42.4
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.2e-09 65.9 99 43.4
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 2.9e-09 65.5 98 38.8
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 3.8e-09 65.1 101 41.6
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 3.8e-09 65.1 72 50.0
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 3.8e-09 65.1 98 44.9
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 3.8e-09 65.1 96 41.7
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 4.9e-09 64.7 100 43.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 4.9e-09 64.7 97 40.2
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.5e-09 64.3 99 42.4
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.4e-08 63.2 100 42.0
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.9e-08 62.8 69 49.3
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.9e-08 62.8 98 39.8
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.5e-08 62.4 98 41.8
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 3.2e-08 62.0 50 62.0
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 3.2e-08 62.0 98 37.8
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 4.2e-08 61.6 99 36.4
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 4.2e-08 61.6 60 50.0
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 5.5e-08 61.2 71 47.9
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 5.5e-08 61.2 50 62.0
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 5.5e-08 61.2 107 43.9
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 9.3e-08 60.5 105 38.1
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 1.2e-07 60.1 93 43.0
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.6e-07 59.7 59 54.2
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.6e-07 59.7 99 41.4
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.6e-07 59.7 98 37.8
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 2.1e-07 59.3 96 40.6
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 2.7e-07 58.9 102 39.2
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.7e-07 58.9 97 39.2
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.7e-07 58.9 99 40.4
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.7e-07 58.9 99 41.4
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 2.7e-07 58.9 59 54.2
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.6e-07 58.2 96 38.5
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 4.6e-07 58.2 59 52.5
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 6.0e-07 57.8 63 47.6
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 7.9e-07 57.4 50 54.0
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 7.9e-07 57.4 86 41.9
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 7.9e-07 57.4 97 40.2
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 1.0e-06 57.0 54 59.3
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.0e-06 57.0 97 38.1
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 1.0e-06 57.0 98 40.8
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.8e-06 56.2 96 38.5
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.3e-06 55.8 99 39.4
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.3e-06 55.8 96 39.6
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.3e-06 55.8 97 40.2
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 3.0e-06 55.5 78 43.6
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 6.7e-06 54.3 71 39.4
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 8.7e-06 53.9 95 38.9


User provided reference genes

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