Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32516 Brassica carinata HOM05D000213 ORTHO05D000426 1.2e-30 136.0 71 100.0
A09p37090 Brassica napus HOM05D000213 ORTHO05D000426 1.1e-28 129.4 71 94.4
BraA09t39224Z Brassica rapa HOM05D000213 ORTHO05D000426 1.1e-28 129.4 71 94.4
C05p28010 Brassica napus HOM05D000213 ORTHO05D000426 4.1e-28 127.5 71 93.0
BolC5t31528H Brassica oleracea HOM05D000213 ORTHO05D000426 4.1e-28 127.5 71 93.0
Sp1g25210 Schrenkiella parvula HOM05D000213 ORTHO05D000426 7.8e-27 123.2 71 88.7
CARHR028600 Cardamine hirsuta HOM05D000213 ORTHO05D000426 3.0e-26 121.3 71 87.3
Thhalv10008510m.g Eutrema salsugineum HOM05D000213 ORTHO05D000426 5.0e-26 120.6 71 87.3
AL1G43070 Arabidopsis lyrata HOM05D000213 ORTHO05D000426 1.9e-25 118.6 71 88.7
AT1G29280 Arabidopsis thaliana HOM05D000213 ORTHO05D000426 7.3e-25 116.7 71 87.3
Carub.0001s2749 Capsella rubella HOM05D000213 ORTHO05D000426 9.5e-25 116.3 73 84.9
BcaB03g12149 Brassica carinata HOM05D000213 ORTHO05D000426 4.9e-21 104.0 71 76.1
A08p25210 Brassica napus HOM05D000213 ORTHO05D000426 5.4e-20 100.5 59 84.7
BraA08t34473Z Brassica rapa HOM05D000213 ORTHO05D000426 5.4e-20 100.5 59 84.7
BcaC01g00090 Brassica carinata HOM05D000213 ORTHO05D000426 2.7e-19 98.2 60 81.7
C03p75660 Brassica napus HOM05D000213 ORTHO05D000426 2.7e-19 98.2 60 81.7
BolC3t19824H Brassica oleracea HOM05D000213 ORTHO05D000426 2.7e-19 98.2 60 81.7
Aa31LG6G6250 Aethionema arabicum HOM05D000213 ORTHO05D000426 3.0e-18 94.7 72 75.0
Manes.16G043080 Manihot esculenta HOM05D000213 ORTHO05D000426 3.6e-16 87.8 69 69.6
Prupe.4G066400 Prunus persica HOM05D000213 ORTHO05D000426 6.2e-16 87.0 69 68.1
THA.LOC104820607 Tarenaya hassleriana HOM05D000213 ORTHO05D000426 8.1e-16 86.7 56 80.4
Potri.004G060900 Populus trichocarpa HOM05D000213 ORTHO05D000426 1.4e-15 85.9 68 67.6
MD05G1295700 Malus domestica HOM05D000213 ORTHO05D000426 3.1e-15 84.7 69 63.8
QL05p049757 Quercus lobata HOM05D000213 ORTHO05D000426 3.1e-15 84.7 70 71.4
Sabra04G0040200 Salix brachista HOM05D000213 ORTHO05D000426 3.1e-15 84.7 69 65.2
TWI09G1630 Tripterygium wilfordii HOM05D000213 ORTHO05D000426 4.0e-15 84.3 69 69.6
Duzib192G0201 Durio zibethinus HOM05D000213 ORTHO05D000426 5.2e-15 84.0 69 68.1
Manes.17G058900 Manihot esculenta HOM05D000213 ORTHO05D000426 5.2e-15 84.0 69 66.7
Cpa.g.sc7.92 Carica papaya HOM05D000213 ORTHO05D000426 1.5e-14 82.4 69 71.0
Duzib160G0748 Durio zibethinus HOM05D000213 ORTHO05D000426 2.6e-14 81.6 71 67.6
Thecc.06G166100 Theobroma cacao HOM05D000213 ORTHO05D000426 4.4e-14 80.9 69 66.7
Atru.chr10.1574 Acer truncatum HOM05D000213 ORTHO05D000426 5.8e-14 80.5 69 63.8
Eucgr.E02783 Eucalyptus grandis HOM05D000213 ORTHO05D000426 5.8e-14 80.5 73 64.4
Gorai.011G037500 Gossypium raimondii HOM05D000213 ORTHO05D000426 5.8e-14 80.5 69 65.2
Gohir.A10G034900 Gossypium hirsutum HOM05D000213 ORTHO05D000426 7.5e-14 80.1 69 66.7
Potri.011G070100 Populus trichocarpa HOM05D000213 ORTHO05D000426 7.5e-14 80.1 69 60.9
Gohir.D10G035600 Gossypium hirsutum HOM05D000213 ORTHO05D000426 1.7e-13 79.0 69 65.2
RcHm_v2.0_Chr5g0011581 Rosa chinensis HOM05D000213 ORTHO05D000426 1.7e-13 79.0 73 63.0
Cfa000650 Carpinus fangiana HOM05D000213 ORTHO05D000426 2.2e-13 78.6 71 63.4
CiPaw.09G072600 Carya illinoinensis HOM05D000213 ORTHO05D000426 2.2e-13 78.6 69 66.7
THA.LOC104814262 Tarenaya hassleriana HOM05D000213 ORTHO05D000426 2.2e-13 78.6 64 70.3
Haze_06179 Corylus avellana HOM05D000213 ORTHO05D000426 2.9e-13 78.2 71 63.4
COL.COLO4_31241 Corchorus olitorius HOM05D000213 ORTHO05D000426 3.7e-13 77.8 69 68.1
Gohir.D05G156300 Gossypium hirsutum HOM05D000213 ORTHO05D000426 3.7e-13 77.8 69 65.2
Gorai.009G160800 Gossypium raimondii HOM05D000213 ORTHO05D000426 3.7e-13 77.8 69 65.2
Sabra11G0054900 Salix brachista HOM05D000213 ORTHO05D000426 3.7e-13 77.8 70 61.4
Sabra11G0058100 Salix brachista HOM05D000213 ORTHO05D000426 3.7e-13 77.8 70 61.4
Ciclev10016229m.g Citrus clementina HOM05D000213 ORTHO05D000426 6.4e-13 77.0 69 60.9
Gohir.A05G153600 Gossypium hirsutum HOM05D000213 ORTHO05D000426 6.4e-13 77.0 69 63.8
MD10G1275800 Malus domestica HOM05D000213 ORTHO05D000426 8.3e-13 76.6 69 62.3
Duzib235G0976 Durio zibethinus HOM05D000213 ORTHO05D000426 1.4e-12 75.9 69 65.2
FAN11G2187 Fragaria x ananassa HOM05D000213 ORTHO05D000426 1.4e-12 75.9 70 61.4
PGR042G3699 Punica granatum HOM05D000213 ORTHO05D000426 1.4e-12 75.9 69 58.0
FvH4_3g07360 Fragaria vesca HOM05D000213 ORTHO05D000426 3.2e-12 74.7 73 58.9
FAN25G0605 Fragaria x ananassa HOM05D000213 ORTHO05D000426 9.2e-12 73.2 73 57.5
FAN16G3340 Fragaria x ananassa HOM05D000213 ORTHO05D000426 1.2e-11 72.8 73 57.5
CiPaw.10G061400 Carya illinoinensis HOM05D000213 ORTHO05D000426 3.5e-11 71.2 69 63.8
Gohir.D06G138500 Gossypium hirsutum HOM05D000213 ORTHO05D000426 4.6e-11 70.9 69 60.9
Gorai.010G161000 Gossypium raimondii HOM05D000213 ORTHO05D000426 4.6e-11 70.9 69 60.9
Gohir.A06G133100 Gossypium hirsutum HOM05D000213 ORTHO05D000426 1.0e-10 69.7 67 61.2
Ca_17899_v3 Cicer arietinum L. HOM05D000213 ORTHO05D000426 3.0e-10 68.2 59 67.8
MELO3C002675.2 Cucumis melo HOM05D000213 ORTHO05D000426 5.1e-10 67.4 60 63.3
CsaV3_1G033110 Cucumis sativus L. HOM05D000213 ORTHO05D000426 5.1e-10 67.4 60 63.3
GSVIVG01021252001 Vitis vinifera HOM05D000213 ORTHO05D000426 8.6e-10 66.6 55 70.9
Sed0008537 Sechium edule HOM05D000213 ORTHO05D000426 1.9e-09 65.5 70 58.6
ClCG03G007470 Citrullus lanatus HOM05D000213 ORTHO05D000426 7.3e-09 63.5 60 60.0
Sed0018885 Sechium edule HOM05D000213 ORTHO05D000426 9.5e-09 63.2 58 60.3
SHI21851 Sapria himalayana HOM05D000213 ORTHO05D000426 1.2e-08 62.8 69 58.0
Dinv32342 Davidia involucrata HOM05D000213 ORTHO05D000426 1.6e-08 62.4 59 59.3
Aqoxy1G01997 Aquilegia oxysepala HOM05D000213 ORTHO05D000426 3.6e-08 61.2 55 58.2
Phvul.002G240900 Phaseolus vulgaris HOM05D000213 ORTHO05D000426 3.6e-08 61.2 56 62.5
TAR626G1584 Trochodendron aralioides HOM05D000213 ORTHO05D000426 3.6e-08 61.2 54 61.1
MSTRG.7427 Avicennia marina HOM05D000213 ORTHO05D000426 4.7e-08 60.8 55 58.2
Glyma.08G118200 Glycine max HOM05D000213 ORTHO05D000426 6.2e-08 60.5 56 66.1
Actinidia16776 Actinidia chinensis HOM05D000213 ORTHO05D000426 8.1e-08 60.1 59 57.6
Actinidia35599 Actinidia chinensis HOM05D000213 ORTHO05D000426 8.1e-08 60.1 59 57.6
Lj4g0003872 Lotus japonicus HOM05D000213 ORTHO05D000426 8.1e-08 60.1 60 61.7
VMungo0251G2719 Vigna mungo HOM05D000213 ORTHO05D000426 1.1e-07 59.7 56 60.7
Medtr8g087000 Medicago truncatula HOM05D000213 ORTHO05D000426 1.4e-07 59.3 58 58.6
QL08p042333 Quercus lobata HOM05D000213 ORTHO05D000426 1.4e-07 59.3 62 53.2
TAR189G0003 Trochodendron aralioides HOM05D000213 ORTHO05D000426 1.4e-07 59.3 54 59.3
TAR624G0267 Trochodendron aralioides HOM05D000213 ORTHO05D000426 1.4e-07 59.3 54 59.3
Sc17g0005650 Simmondsia chinensis HOM05D000213 ORTHO05D000426 2.4e-07 58.5 41 61.0
Lsat_1_v5_gn_4_48480 Lactuca sativa HOM05D000213 ORTHO05D000426 3.1e-07 58.2 59 52.5
MSTRG.16168 Avicennia marina HOM05D000213 ORTHO05D000426 4.0e-07 57.8 55 58.2
Cc02_g15550 Coffea canephora HOM05D000213 ORTHO05D000426 6.8e-07 57.0 57 59.6
Glyma.05G160800 Glycine max HOM05D000213 ORTHO05D000426 6.8e-07 57.0 56 62.5
Psat7g069920 Pisum sativum HOM05D000213 ORTHO05D000426 6.8e-07 57.0 56 58.9
TWI59G1084 Tripterygium wilfordii HOM05D000213 ORTHO05D000426 6.8e-07 57.0 49 61.2
Glyma.12G212300 Glycine max HOM05D000213 ORTHO05D000426 8.9e-07 56.6 59 57.6
Lj1A1175T52 Lonicera japonica HOM05D000213 ORTHO05D000426 8.9e-07 56.6 68 51.5
EL10Ac8g20562 Beta vulgaris HOM05D000213 ORTHO05D000426 1.2e-06 56.2 39 66.7
Glyma.13G289400 Glycine max HOM05D000213 ORTHO05D000426 1.2e-06 56.2 55 61.8
TAR629G0775 Trochodendron aralioides HOM05D000213 ORTHO05D000426 1.2e-06 56.2 54 57.4
arahy.Tifrunner.gnm1.ann1.7E4BRJ Arachis hypogaea HOM05D000213 ORTHO05D000426 1.5e-06 55.8 54 55.6
ECA234G3662 Erigeron canadensis HOM05D000213 ORTHO05D000426 1.5e-06 55.8 59 52.5
Migut.M01011 Erythranthe guttata HOM05D000213 ORTHO05D000426 1.5e-06 55.8 55 56.4
Oeu039883.1 Olea europaea HOM05D000213 ORTHO05D000426 1.5e-06 55.8 71 45.1
HanXRQChr10g0299711 Helianthus annuus HOM05D000213 ORTHO05D000426 2.0e-06 55.5 56 53.6
Lalb_Chr12g0204961 Lupinus albus HOM05D000213 ORTHO05D000426 2.0e-06 55.5 65 52.3
PGSC0003DMG401010558 Solanum tuberosum HOM05D000213 ORTHO05D000426 2.0e-06 55.5 39 61.5
ECA236G1160 Erigeron canadensis HOM05D000213 ORTHO05D000426 2.6e-06 55.1 57 49.1
Hma1.2p1_2373F.1_g320820 Hydrangea macrophylla HOM05D000213 ORTHO05D000426 2.6e-06 55.1 56 53.6
Hma1.2p1_2373F.1_g320830 Hydrangea macrophylla HOM05D000213 ORTHO05D000426 2.6e-06 55.1 56 53.6
Solyc10g007970.2 Solanum lycopersicum HOM05D000213 ORTHO05D000426 2.6e-06 55.1 37 67.6
Sopen10g003840 Solanum pennellii HOM05D000213 ORTHO05D000426 2.6e-06 55.1 37 67.6
HanXRQChr16g0519151 Helianthus annuus HOM05D000213 ORTHO05D000426 3.4e-06 54.7 55 54.5
Ca_00465_v3 Cicer arietinum L. HOM05D000213 ORTHO05D000426 5.8e-06 53.9 65 44.6
CSS0009850 Camellia sinensis var. sinensis HOM05D000213 ORTHO05D000426 7.6e-06 53.5 56 50.0
Dinv12756 Davidia involucrata HOM05D000213 ORTHO05D000426 7.6e-06 53.5 52 57.7
Dinv24705 Davidia involucrata HOM05D000213 ORTHO05D000426 7.6e-06 53.5 52 57.7
Lsat_1_v5_gn_7_25760 Lactuca sativa HOM05D000213 ORTHO05D000426 7.6e-06 53.5 59 47.5
SalBow8G0158 Salvia bowleyana HOM05D000213 ORTHO05D000426 9.9e-06 53.1 56 53.6


User provided reference genes

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