Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32428 Brassica carinata HOM05D002829 ORTHO05D003124 5.7e-142 507.7 276 100.0
C05p27000 Brassica napus HOM05D002829 ORTHO05D003124 6.1e-128 461.1 280 93.6
BolC5t31417H Brassica oleracea HOM05D002829 ORTHO05D003124 1.4e-127 459.9 280 90.0
A09p37870 Brassica napus HOM05D002829 ORTHO05D003124 1.8e-127 459.5 282 89.4
BraA09t39299Z Brassica rapa HOM05D002829 ORTHO05D003124 1.8e-127 459.5 282 89.4
BcaC05g26825 Brassica carinata HOM05D002829 ORTHO05D003124 3.0e-127 458.8 280 90.0
Sp1g24380 Schrenkiella parvula HOM05D002829 ORTHO05D003124 2.7e-115 419.1 281 85.4
BcaB03g12129 Brassica carinata HOM05D002829 ORTHO05D003124 4.4e-102 375.2 280 79.6
Thhalv10008463m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 3.2e-100 369.0 285 74.4
A08p25820 Brassica napus HOM05D002829 ORTHO05D003124 1.1e-95 354.0 280 76.4
BraA08t34537Z Brassica rapa HOM05D002829 ORTHO05D003124 1.1e-95 354.0 280 76.4
CARHR027680 Cardamine hirsuta HOM05D002829 ORTHO05D003124 1.8e-95 353.2 278 73.0
BolC3t19731H Brassica oleracea HOM05D002829 ORTHO05D003124 6.4e-93 344.7 273 74.0
AL1G41730 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 2.4e-92 342.8 279 69.2
BcaC01g00013 Brassica carinata HOM05D002829 ORTHO05D003124 1.9e-89 333.2 256 74.2
C03p74800 Brassica napus HOM05D002829 ORTHO05D003124 1.9e-89 333.2 256 74.2
Carub.0001s2663 Capsella rubella HOM05D002829 ORTHO05D003124 1.2e-86 323.9 278 67.3
AT1G28190 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 1.6e-83 313.5 237 74.3
Aa31sc50G50 Aethionema arabicum HOM05D002829 ORTHO05D003124 3.0e-74 282.7 252 62.7
THA.LOC104820537 Tarenaya hassleriana HOM05D002829 ORTHO05D003124 5.5e-60 235.3 282 51.1
A01p30880 Brassica napus HOM05D002829 ORTHO05D003124 2.1e-43 180.3 123 80.5
TAR622G0550 Trochodendron aralioides HOM05D002829 ORTHO05D003124 5.3e-39 165.6 258 40.7
Cpa.g.sc38.55 Carica papaya HOM05D002829 ORTHO05D003124 1.2e-38 164.5 217 47.0
MD13G1134300 Malus domestica HOM05D002829 ORTHO05D003124 1.2e-38 164.5 214 46.7
Sabra01G0049600 Salix brachista HOM05D002829 ORTHO05D003124 2.0e-38 163.7 181 51.4
Atru.chr12.1478 Acer truncatum HOM05D002829 ORTHO05D003124 2.2e-37 160.2 222 46.4
FAN07G1465 Fragaria x ananassa HOM05D002829 ORTHO05D003124 3.8e-37 159.5 210 45.7
Potri.003G160000 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.4e-36 157.5 235 44.3
Thecc.01G239500 Theobroma cacao HOM05D002829 ORTHO05D003124 1.4e-36 157.5 285 39.6
MBI11_g17276_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 2.5e-36 156.8 234 45.3
Ciclev10029923m.g Citrus clementina HOM05D002829 ORTHO05D003124 5.5e-36 155.6 229 43.7
Potri.001G070700 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.2e-35 154.5 232 44.8
Prupe.1G211200 Prunus persica HOM05D002829 ORTHO05D003124 1.2e-35 154.5 217 44.7
FvH4_4g22140 Fragaria vesca HOM05D002829 ORTHO05D003124 1.6e-35 154.1 233 45.1
FAN12G1147 Fragaria x ananassa HOM05D002829 ORTHO05D003124 1.6e-35 154.1 233 45.1
Manes.08G099100 Manihot esculenta HOM05D002829 ORTHO05D003124 2.1e-35 153.7 236 43.2
QL03p048302 Quercus lobata HOM05D002829 ORTHO05D003124 2.7e-35 153.3 259 40.2
Cfa009474 Carpinus fangiana HOM05D002829 ORTHO05D003124 3.6e-35 152.9 234 42.3
CiPaw.06G111500 Carya illinoinensis HOM05D002829 ORTHO05D003124 6.1e-35 152.1 259 44.0
Sabra03G0116300 Salix brachista HOM05D002829 ORTHO05D003124 6.1e-35 152.1 232 42.7
MELO3C026752.2 Cucumis melo HOM05D002829 ORTHO05D003124 7.9e-35 151.8 217 41.9
FAN17G0858 Fragaria x ananassa HOM05D002829 ORTHO05D003124 1.0e-34 151.4 214 44.4
MD16G1144900 Malus domestica HOM05D002829 ORTHO05D003124 1.4e-34 151.0 210 45.2
Haze_12531 Corylus avellana HOM05D002829 ORTHO05D003124 5.1e-34 149.1 237 40.5
ClCG10G013080 Citrullus lanatus HOM05D002829 ORTHO05D003124 6.7e-34 148.7 222 41.9
TWI36G1156 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 6.7e-34 148.7 191 46.6
RcHm_v2.0_Chr4g0428381 Rosa chinensis HOM05D002829 ORTHO05D003124 8.8e-34 148.3 200 43.5
Duzib147G1098 Durio zibethinus HOM05D002829 ORTHO05D003124 1.1e-33 147.9 249 41.8
Duzib264G0406 Durio zibethinus HOM05D002829 ORTHO05D003124 1.1e-33 147.9 215 42.8
Gohir.D11G063400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.5e-33 147.5 241 40.7
Eucgr.J01660 Eucalyptus grandis HOM05D002829 ORTHO05D003124 2.0e-33 147.1 260 39.6
TWI18G0126 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 3.3e-33 146.4 239 41.8
CiPaw.05G097800 Carya illinoinensis HOM05D002829 ORTHO05D003124 7.4e-33 145.2 264 36.4
PGR102G0495 Punica granatum HOM05D002829 ORTHO05D003124 1.7e-32 144.1 249 40.2
CSS0000234 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 2.2e-32 143.7 214 45.8
CSS0019210 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 2.2e-32 143.7 214 45.8
Gohir.A11G059300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 2.8e-32 143.3 245 40.4
Gorai.007G068500 Gossypium raimondii HOM05D002829 ORTHO05D003124 2.8e-32 143.3 245 40.4
TWI75G0707 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 3.7e-32 142.9 264 38.6
MBI07_g42014_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010528 8.2e-32 141.7 204 42.6
Oeu011726.1 Olea europaea HOM05D002829 ORTHO05D003124 2.4e-31 140.2 190 44.2
COL.COLO4_16099 Corchorus olitorius HOM05D002829 ORTHO05D003124 4.1e-31 139.4 225 40.9
MSTRG.8064 Avicennia marina HOM05D002829 ORTHO05D003124 1.2e-30 137.9 211 41.2
Sed0018664 Sechium edule HOM05D002829 ORTHO05D003124 5.9e-30 135.6 209 38.3
PSO017G0067 Papaver somniferum HOM05D002829 ORTHO05D003124 7.7e-30 135.2 256 36.7
ATR0582G260 Amborella trichopoda HOM05D002829 ORTHO05D003124 2.2e-29 133.7 205 40.5
CDE09G0437 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 2.2e-29 133.7 194 43.3
MSTRG.439 Avicennia marina HOM05D002829 ORTHO05D003124 6.5e-29 132.1 211 39.8
Sed0013476 Sechium edule HOM05D002829 ORTHO05D003124 6.5e-29 132.1 188 44.1
PSO478G2462 Papaver somniferum HOM05D002829 ORTHO05D003124 8.5e-29 131.7 233 38.6
Migut.K01135 Erythranthe guttata HOM05D002829 ORTHO05D003124 1.6e-27 127.5 201 39.3
CDE02G1175 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 3.0e-26 123.2 185 41.1
Oeu010270.1 Olea europaea HOM05D002829 ORTHO05D003124 5.3e-23 112.5 170 42.9
HanXRQChr17g0568751 Helianthus annuus HOM05D002829 ORTHO05D003124 8.5e-21 105.1 250 36.8
Lsat_1_v5_gn_4_1720 Lactuca sativa HOM05D002829 ORTHO05D003124 1.1e-20 104.8 210 37.6
HPP92_000320 Vanilla planifolia HOM05D002829 ORTHO05D003124 6.1e-19 99.0 198 36.9
Ciclev10016678m.g Citrus clementina HOM05D002829 ORTHO05D003124 4.0e-18 96.3 190 35.3
unitig_699.g19969 Utricularia gibba HOM05D002829 ORTHO05D003124 2.6e-17 93.6 210 33.8
unitig_747.g21104 Utricularia gibba HOM05D002829 ORTHO05D003124 5.7e-17 92.4 190 33.2
SEGI_01737 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 7.5e-17 92.0 193 32.6
Oeu039578.1 Olea europaea HOM05D002829 ORTHO05D003124 9.7e-17 91.7 181 34.3
HPP92_020117 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.7e-16 90.9 193 33.2
Glyma.14G034700 Glycine max HOM05D002829 ORTHO05D003124 1.4e-15 87.8 185 32.4
Oeu025903.1 Olea europaea HOM05D002829 ORTHO05D003124 1.8e-15 87.4 181 34.3
Nn7g36674 Nelumbo nucifera HOM05D002829 ORTHO05D003124 7.0e-15 85.5 203 32.5
SEGI_29550 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 9.1e-15 85.1 187 32.6
MD03G1167500 Malus domestica HOM05D002829 ORTHO05D003124 1.2e-14 84.7 182 34.6
Gohir.A07G120300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 2.0e-14 84.0 203 32.0
Gohir.D07G124500 Gossypium hirsutum HOM05D002829 ORTHO05D003124 2.0e-14 84.0 203 32.0
Gorai.001G134300 Gossypium raimondii HOM05D002829 ORTHO05D003124 2.0e-14 84.0 203 32.0
Zm00001eb113580 Zea mays HOM05D002829 ORTHO05D003124 3.5e-14 83.2 182 32.4
PGSC0003DMG400016928 Solanum tuberosum HOM05D002829 ORTHO05D003124 4.5e-14 82.8 184 33.2
Glyma.02G280100 Glycine max HOM05D002829 ORTHO05D003124 5.9e-14 82.4 186 31.7
Peaxi162Scf00156g00044 Petunia axillaris HOM05D002829 ORTHO05D003124 5.9e-14 82.4 181 32.6
Psat0s3829g0080 Pisum sativum HOM05D002829 ORTHO05D003124 5.9e-14 82.4 182 34.6
PGR102G2796 Punica granatum HOM05D002829 ORTHO05D003124 5.9e-14 82.4 200 31.5
FAN11G2404 Fragaria x ananassa HOM05D002829 ORTHO05D003124 1.3e-13 81.3 179 34.6
CSS0010856 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 1.7e-13 80.9 189 33.9
CiPaw.14G113800 Carya illinoinensis HOM05D002829 ORTHO05D003124 1.7e-13 80.9 196 32.1
Nitab4.5_0000276g0100 Nicotiana tabacum HOM05D002829 ORTHO05D003124 1.7e-13 80.9 184 33.2
Peaxi162Scf00741g00031 Petunia axillaris HOM05D002829 ORTHO05D003124 1.7e-13 80.9 183 32.2
Rhsim13G0210900 Rhododendron simsii HOM05D002829 ORTHO05D003124 1.7e-13 80.9 160 35.6
Lsat_1_v5_gn_9_13041 Lactuca sativa HOM05D002829 ORTHO05D003124 2.2e-13 80.5 172 36.0
Nn2g14835 Nelumbo nucifera HOM05D002829 ORTHO05D003124 2.2e-13 80.5 198 31.8
FvH4_3g27940 Fragaria vesca HOM05D002829 ORTHO05D003124 2.9e-13 80.1 164 36.6
MD11G1186400 Malus domestica HOM05D002829 ORTHO05D003124 2.9e-13 80.1 183 33.3
Nitab4.5_0000456g0140 Nicotiana tabacum HOM05D002829 ORTHO05D003124 2.9e-13 80.1 200 32.5
TPR.G19349 Trifolium pratense HOM05D002829 ORTHO05D003124 2.9e-13 80.1 181 32.6
FAN16G1561 Fragaria x ananassa HOM05D002829 ORTHO05D003124 3.8e-13 79.7 164 36.0
FAN21G1998 Fragaria x ananassa HOM05D002829 ORTHO05D003124 3.8e-13 79.7 164 36.0
Atru.chr3.2771 Acer truncatum HOM05D002829 ORTHO05D003124 5.0e-13 79.3 181 34.3
Nn3g16206 Nelumbo nucifera HOM05D002829 ORTHO05D003124 5.0e-13 79.3 57 59.6
Nn4g22068 Nelumbo nucifera HOM05D002829 ORTHO05D003124 5.0e-13 79.3 65 55.4
Cpa.g.sc482.1 Carica papaya HOM05D002829 ORTHO05D003124 6.5e-13 79.0 184 33.7
PGR119G1580 Punica granatum HOM05D002829 ORTHO05D003124 6.5e-13 79.0 192 32.3
Manes.02G139900 Manihot esculenta HOM05D002829 ORTHO05D003124 8.5e-13 78.6 182 33.0
Duzib168G0270 Durio zibethinus HOM05D002829 ORTHO05D003124 1.1e-12 78.2 194 32.0
arahy.Tifrunner.gnm1.ann1.9SET9D Arachis hypogaea HOM05D002829 ORTHO05D003124 1.5e-12 77.8 207 34.8
CANSAT54G2047 Cannabis sativa HOM05D002829 ORTHO05D003124 1.9e-12 77.4 201 29.9
Cc01_g05450 Coffea canephora HOM05D002829 ORTHO05D003124 1.9e-12 77.4 156 34.6
HanXRQChr14g0432431 Helianthus annuus HOM05D002829 ORTHO05D003124 1.9e-12 77.4 181 33.1
Thecc.09G249600 Theobroma cacao HOM05D002829 ORTHO05D003124 1.9e-12 77.4 202 32.2
CiPaw.13G151500 Carya illinoinensis HOM05D002829 ORTHO05D003124 2.5e-12 77.0 195 31.8
Peaxi162Scf00994g00001 Petunia axillaris HOM05D002829 ORTHO05D003124 2.5e-12 77.0 166 33.7
arahy.Tifrunner.gnm1.ann1.Z08FR7 Arachis hypogaea HOM05D002829 ORTHO05D003124 3.2e-12 76.6 205 35.1
HPP92_025013 Vanilla planifolia HOM05D002829 ORTHO05D003124 3.2e-12 76.6 196 31.1
COL.COLO4_06524 Corchorus olitorius HOM05D002829 ORTHO05D003124 4.2e-12 76.3 195 31.3
Medtr5g089820 Medicago truncatula HOM05D002829 ORTHO05D003124 5.5e-12 75.9 181 32.0
Carub.0006s1085 Capsella rubella HOM05D002829 ORTHO05D003124 7.2e-12 75.5 174 33.3
DCAR_002104 Daucus carota HOM05D002829 ORTHO05D003124 7.2e-12 75.5 208 32.2
Thhalv10015959m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 7.2e-12 75.5 172 32.0
Phvul.006G030300 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 7.2e-12 75.5 181 32.6
Eucgr.B03728 Eucalyptus grandis HOM05D002829 ORTHO05D003124 9.4e-12 75.1 192 32.3
SGA_v2.0_scaffold29G12253 Striga asiatica HOM05D002829 ORTHO05D003124 1.2e-11 74.7 164 36.0
Duzib265G0001 Durio zibethinus HOM05D002829 ORTHO05D003124 1.6e-11 74.3 195 31.3
Lj6g0027879 Lotus japonicus HOM05D002829 ORTHO05D003124 1.6e-11 74.3 186 36.6
Duzib150G0976 Durio zibethinus HOM05D002829 ORTHO05D003124 2.7e-11 73.6 195 31.3
Phvul.006G030200 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 3.6e-11 73.2 180 32.2
BraA02t05127Z Brassica rapa HOM05D002829 ORTHO05D003124 6.1e-11 72.4 172 31.4
Ciclev10017998m.g Citrus clementina HOM05D002829 ORTHO05D003124 6.1e-11 72.4 211 30.8
QL01p017384 Quercus lobata HOM05D002829 ORTHO05D003124 1.0e-10 71.6 180 32.2
LjContig00049g0000214 Lotus japonicus HOM05D002829 ORTHO05D003124 1.4e-10 71.2 183 31.1
Potri.009G071100 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.8e-10 70.9 183 31.1
A02p01480 Brassica napus HOM05D002829 ORTHO05D003124 4.0e-10 69.7 172 30.8
Migut.D00655 Erythranthe guttata HOM05D002829 ORTHO05D003124 5.2e-10 69.3 183 31.7
Os01g0952900 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 5.2e-10 69.3 190 31.1
SalBow6G5405 Salvia bowleyana HOM05D002829 ORTHO05D003124 1.2e-09 68.2 167 34.7
GSVIVG01008464001 Vitis vinifera HOM05D007478 ORTHO05D001700 1.5e-09 67.8 78 44.9
ECA238G1676 Erigeron canadensis HOM05D002829 ORTHO05D003124 5.7e-09 65.9 195 25.6
Nn7g36102 Nelumbo nucifera HOM05D002829 ORTHO05D003124 5.7e-09 65.9 80 45.0
PSO384G3239 Papaver somniferum HOM05D002829 ORTHO05D003124 7.5e-09 65.5 184 29.9
ClCG03G012660 Citrullus lanatus HOM05D002829 ORTHO05D003124 1.7e-08 64.3 182 32.4
PSO339G3894 Papaver somniferum HOM05D002829 ORTHO05D003124 1.7e-08 64.3 184 29.3
CsaV3_1G043320 Cucumis sativus L. HOM05D002829 ORTHO05D003124 2.2e-08 63.9 161 32.9
Sed0001383 Sechium edule HOM05D002829 ORTHO05D003124 2.8e-08 63.5 165 33.9
PGSC0003DMG400023470 Solanum tuberosum HOM05D002829 ORTHO05D003124 2.8e-08 63.5 136 30.1
MELO3C015127.2 Cucumis melo HOM05D002829 ORTHO05D003124 3.7e-08 63.2 182 34.1
Manes.01G179200 Manihot esculenta HOM05D002829 ORTHO05D003124 4.8e-08 62.8 180 26.7
Nn5g30140 Nelumbo nucifera HOM05D002829 ORTHO05D003124 6.3e-08 62.4 58 46.6
EL10Ac4g10137 Beta vulgaris HOM05D002829 ORTHO05D003124 8.3e-08 62.0 199 32.2
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 2.4e-07 60.5 178 28.7
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 3.1e-07 60.1 97 37.1
Sed0010124 Sechium edule HOM05D002829 ORTHO05D003124 5.4e-07 59.3 181 30.4
AUR62000184 Chenopodium quinoa HOM05D002829 ORTHO05D003124 9.1e-07 58.5 187 28.9
Potri.004G149600 Populus trichocarpa HOM05D001022 ORTHO05D000825 1.2e-06 58.2 82 36.6
QL10p030590 Quercus lobata HOM05D007478 ORTHO05D001700 1.2e-06 58.2 78 39.7
CDE08G1493 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 1.6e-06 57.8 169 30.8
MBI16_g36201_MAGBIO Magnolia biondii HOM05D000217 ORTHO05D000121 2.0e-06 57.4 102 27.5
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 2.7e-06 57.0 71 42.3
Nn6g35490 Nelumbo nucifera HOM05D002829 ORTHO05D003124 3.5e-06 56.6 55 40.0
ECA238G0262 Erigeron canadensis HOM05D001022 ORTHO05D000825 5.9e-06 55.8 79 39.2
Manes.15G146900 Manihot esculenta HOM05D001022 ORTHO05D000825 5.9e-06 55.8 96 35.4
EL10Ac4g10150 Beta vulgaris HOM05D002829 ORTHO05D003124 7.7e-06 55.5 171 33.3
CiPaw.15G144400 Carya illinoinensis HOM05D007478 ORTHO05D001700 7.7e-06 55.5 97 36.1


User provided reference genes

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