Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 6.3e-274 946.8 471 100.0
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 4.5e-240 834.3 468 88.9
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-238 828.2 468 88.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 5.5e-238 827.4 468 88.5
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.8e-228 795.8 469 84.0
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-226 789.3 469 83.8
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-225 786.6 469 83.6
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.8e-225 785.8 469 83.2
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-225 785.4 469 83.4
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 2.4e-225 785.4 469 83.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-224 782.3 469 82.9
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.7e-224 781.9 469 84.6
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.3e-223 779.6 468 82.5
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.7e-223 779.2 467 83.5
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-222 776.5 468 82.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.4e-220 769.6 468 82.3
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 4.9e-218 761.1 468 82.9
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-210 736.5 445 83.4
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.6e-208 729.6 468 79.3
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 4.7e-197 691.4 468 73.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 3.5e-192 675.2 469 75.1
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 8.7e-191 670.6 447 77.2
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 5.3e-188 661.4 388 86.9
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.9e-174 616.3 467 64.5
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.8e-170 602.1 464 65.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.1e-168 596.3 463 65.0
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-167 592.0 447 72.0
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.1e-167 591.7 464 64.2
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.1e-167 591.7 464 64.2
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 9.7e-166 587.4 464 64.0
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-165 586.6 464 63.6
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 8.2e-165 584.3 464 63.4
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.2e-163 580.5 460 62.2
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 5.9e-163 578.2 460 62.2
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 7.7e-163 577.8 460 62.2
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 2.9e-162 575.9 464 61.6
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 8.5e-162 574.3 468 61.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-161 573.9 468 60.5
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 1.4e-161 573.5 469 60.8
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 7.2e-161 571.2 464 61.4
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 7.2e-161 571.2 468 60.5
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 2.1e-160 569.7 458 61.6
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-159 566.2 460 61.3
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.1e-158 563.9 468 60.3
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.5e-158 563.5 440 62.5
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 2.5e-158 562.8 442 63.1
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 3.3e-158 562.4 460 60.4
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.3e-158 562.0 460 60.4
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 5.7e-158 561.6 488 60.0
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 9.7e-158 560.8 467 59.1
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.7e-158 560.8 460 60.2
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.7e-157 560.1 460 60.0
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 3.7e-157 558.9 438 63.7
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.7e-157 558.9 460 60.0
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 3.7e-157 558.9 460 59.6
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 4.8e-157 558.5 489 58.5
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 8.2e-157 557.8 460 60.9
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.1e-156 557.4 467 59.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 5.3e-156 555.1 459 60.1
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 9.1e-156 554.3 459 60.1
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.2e-155 553.9 460 60.0
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.2e-155 553.9 464 59.5
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.2e-155 553.9 465 59.6
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 7.7e-155 551.2 460 59.6
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.2e-154 549.7 460 58.3
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.9e-154 549.3 465 57.6
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 3.8e-154 548.9 421 65.6
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.5e-154 548.1 468 58.8
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.9e-153 546.6 475 57.7
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 9.4e-153 544.3 469 58.4
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.1e-152 543.1 469 59.3
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.1e-152 543.1 460 58.7
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 4.7e-152 542.0 469 57.4
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.0e-151 540.8 469 57.8
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.0e-151 540.8 460 58.0
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 8.8e-151 537.7 469 57.6
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.5e-150 537.0 458 57.6
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 2.0e-150 536.6 469 56.5
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.6e-150 536.2 458 58.5
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 3.3e-150 535.8 468 57.5
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 5.7e-150 535.0 438 61.2
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 7.4e-150 534.6 466 57.1
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 9.7e-150 534.3 458 57.9
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 9.7e-150 534.3 461 57.5
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 2.8e-149 532.7 467 55.9
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 3.7e-149 532.3 467 56.7
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 4.8e-149 531.9 458 57.2
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 4.8e-149 531.9 461 57.5
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 6.3e-149 531.6 461 57.7
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.1e-148 529.3 469 56.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 4.1e-148 528.9 459 58.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.5e-147 526.9 457 58.2
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 7.7e-147 524.6 465 56.6
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.2e-146 523.1 467 56.1
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 2.5e-145 519.6 435 59.5
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 7.2e-145 518.1 460 57.6
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.7e-144 515.4 462 55.2
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.6e-142 509.6 435 59.1
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.8e-141 506.1 417 59.5
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 4.5e-139 498.8 461 54.9
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.3e-138 497.3 470 54.0
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.9e-137 493.4 460 52.8
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 3.2e-137 492.7 455 54.5
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 8.0e-136 488.0 468 53.6
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 8.2e-133 478.0 461 52.3
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 3.1e-132 476.1 438 56.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-130 470.7 464 52.6
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 3.8e-130 469.2 466 50.0
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.9e-129 466.8 442 51.6
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.2e-129 465.7 364 64.3
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 8.0e-128 461.5 467 50.3
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.8e-125 453.0 462 49.6
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 3.5e-123 446.0 477 52.8
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 7.2e-121 438.3 438 50.9
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.8e-120 436.4 488 47.7
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 4.7e-120 435.6 346 62.7
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 3.0e-119 433.0 468 51.3
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 3.1e-116 422.9 359 59.3
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 2.0e-110 403.7 505 44.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.6e-102 376.7 429 46.4
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 9.2e-100 368.2 499 43.3
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 4.1e-92 342.8 474 41.1
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-86 324.7 226 75.7
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.9e-84 317.4 444 40.5
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 3.6e-80 303.1 313 57.8
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 7.6e-78 295.4 431 38.1
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 2.3e-74 283.9 253 56.5
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-63 248.1 192 62.5
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.4e-63 247.3 192 62.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.4e-63 247.3 189 64.6
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 9.0e-63 245.4 270 49.3
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-57 227.6 217 56.7
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 8.2e-56 222.2 217 54.8
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.7e-51 207.2 197 54.3
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 7.9e-51 205.7 146 66.4
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-46 191.4 387 37.0
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-41 175.3 142 68.3
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-40 171.0 142 66.2
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 4.5e-38 163.3 151 55.0
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 7.7e-38 162.5 173 52.0
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.5e-36 156.4 112 67.9
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 6.3e-32 142.9 74 89.2
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 3.1e-31 140.6 111 62.2
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 4.1e-31 140.2 118 63.6
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-31 140.2 74 87.8
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.6e-30 137.5 76 77.6
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 3.5e-30 137.1 107 70.1
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-28 132.1 214 44.4
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.5e-28 131.7 113 63.7
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 8.0e-27 125.9 135 53.3
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-26 124.4 78 78.2
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-23 113.6 214 42.1
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 1.0e-21 109.0 93 59.1
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.2e-21 107.8 56 85.7
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 9.4e-20 102.4 82 62.2
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.2e-17 95.5 88 61.4
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 4.4e-17 93.6 217 39.6
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.7e-17 93.2 57 66.7
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 5.4e-15 86.7 106 45.3
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 1.6e-14 85.1 47 89.4
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 4.5e-14 83.6 114 40.4
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.2e-13 81.3 73 50.7
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 2.9e-13 80.9 47 87.2
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 8.5e-13 79.3 100 45.0
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.9e-12 78.2 56 58.9
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 1.9e-12 78.2 209 36.4
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.6e-11 73.9 186 30.6
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.8e-10 71.6 194 28.4
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 8.8e-10 69.3 56 66.1
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 1.3e-08 65.5 41 75.6
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.7e-08 65.1 180 28.9
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 4.1e-07 60.5 91 36.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-06 58.5 63 44.4
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 2.0e-06 58.2 127 29.1
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.5e-06 57.4 63 44.4


User provided reference genes

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