Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32343 Brassica carinata HOM05D008527 ORTHO05D010701 3.2e-94 348.6 202 100.0
A09p41140 Brassica napus HOM05D008527 ORTHO05D010701 2.1e-77 292.7 213 84.0
BraA09t39607Z Brassica rapa HOM05D008527 ORTHO05D010701 2.1e-77 292.7 213 84.0
BolC5t30985H Brassica oleracea HOM05D008527 ORTHO05D010701 6.1e-77 291.2 213 84.0
BcaC05g26275 Brassica carinata HOM05D008527 ORTHO05D010701 1.4e-76 290.0 213 83.6
C05p22860 Brassica napus HOM05D008527 ORTHO05D010701 6.8e-76 287.7 213 83.1
Sp1g20970 Schrenkiella parvula HOM05D008527 ORTHO05D010701 4.7e-45 185.3 207 56.5
BcaB03g11943 Brassica carinata HOM05D008527 ORTHO05D010701 1.4e-44 183.7 208 55.8
BcaB03g11945 Brassica carinata HOM05D008527 ORTHO05D010701 1.4e-44 183.7 208 55.8
A08p28140 Brassica napus HOM05D008527 ORTHO05D010701 5.2e-44 181.8 207 55.6
BraA08t34747Z Brassica rapa HOM05D008527 ORTHO05D010701 5.2e-44 181.8 207 55.6
AL1G37290 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 2.1e-40 169.9 207 50.7
BcaC07g39203 Brassica carinata HOM05D008527 ORTHO05D010701 2.7e-40 169.5 207 56.5
C08p21950 Brassica napus HOM05D008527 ORTHO05D010701 2.7e-40 169.5 207 56.5
BolC8t49831H Brassica oleracea HOM05D008527 ORTHO05D010701 2.7e-40 169.5 207 56.5
BcaC06g35042 Brassica carinata HOM05D008527 ORTHO05D010701 7.8e-40 167.9 208 53.8
A07p13850 Brassica napus HOM05D008527 ORTHO05D010701 7.8e-40 167.9 208 53.8
BolC7t42561H Brassica oleracea HOM05D008527 ORTHO05D010701 7.8e-40 167.9 208 53.8
BraA07t29139Z Brassica rapa HOM05D008527 ORTHO05D010701 1.3e-39 167.2 208 52.9
C07p20400 Brassica napus HOM05D008527 ORTHO05D010701 3.0e-39 166.0 208 53.4
Thhalv10008871m.g Eutrema salsugineum HOM05D008527 ORTHO05D010701 7.6e-35 151.4 207 49.3
BcaNung06957 Brassica carinata HOM05D008527 ORTHO05D010701 3.9e-31 139.0 207 51.2
BcaB03g14145 Brassica carinata HOM05D008527 ORTHO05D010701 5.1e-31 138.7 209 49.3
Carub.0001s2307 Capsella rubella HOM05D008527 ORTHO05D010701 4.0e-28 129.0 210 43.3
CARHR023970 Cardamine hirsuta HOM05D008527 ORTHO05D010701 1.3e-26 124.0 214 43.0
AT1G23530 Arabidopsis thaliana HOM05D008527 ORTHO05D010701 4.6e-24 115.5 211 42.2
Aa31LG7G7580 Aethionema arabicum HOM05D008527 ORTHO05D010701 8.7e-23 111.3 213 43.7
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 1.9e-22 110.2 137 52.6
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 2.1e-21 106.7 202 46.5
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 1.4e-20 104.0 170 46.5
AL2G29840 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 4.5e-19 99.0 131 56.5
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 5.8e-19 98.6 128 49.2
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 5.8e-19 98.6 128 49.2
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 1.7e-18 97.1 128 49.2
Sp5g25540 Schrenkiella parvula HOM05D008527 ORTHO05D010701 3.8e-18 95.9 140 48.6
BcaC03g15190 Brassica carinata HOM05D008527 ORTHO05D010701 4.2e-17 92.4 128 58.6
C02p27710 Brassica napus HOM05D008527 ORTHO05D010701 4.2e-17 92.4 128 58.6
THA.LOC104824704 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 7.1e-17 91.7 206 40.8
Thhalv10019272m.g Eutrema salsugineum HOM05D008527 ORTHO05D010701 1.0e-15 87.8 132 54.5
BcaB05g24574 Brassica carinata HOM05D008527 ORTHO05D010701 3.9e-15 85.9 76 64.5
BcaB05g24577 Brassica carinata HOM05D008527 ORTHO05D010701 3.9e-15 85.9 76 64.5
BcaC08g46489 Brassica carinata HOM05D008527 ORTHO05D010701 8.7e-15 84.7 86 57.0
A07p36840 Brassica napus HOM05D008527 ORTHO05D010701 8.7e-15 84.7 140 47.1
C06p44320 Brassica napus HOM05D008527 ORTHO05D010701 8.7e-15 84.7 86 57.0
BolC6t39502H Brassica oleracea HOM05D008527 ORTHO05D010701 8.7e-15 84.7 86 57.0
AT1G70470 Arabidopsis thaliana HOM05D008527 ORTHO05D010701 3.1e-12 76.3 71 60.6
A07p31080 Brassica napus HOM05D008527 ORTHO05D010701 1.3e-10 70.9 86 52.3
BraA07t30743Z Brassica rapa HOM05D008527 ORTHO05D010701 1.3e-10 70.9 86 52.3
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 2.2e-10 70.1 156 37.8
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 6.5e-10 68.6 116 50.9
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 8.4e-10 68.2 114 44.7
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 4.2e-09 65.9 161 35.4
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 4.2e-09 65.9 128 41.4
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 4.2e-09 65.9 107 43.9
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 5.5e-09 65.5 117 37.6
CARHR063630 Cardamine hirsuta HOM05D008527 ORTHO05D010701 5.5e-09 65.5 72 54.2
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 7.1e-09 65.1 105 41.0
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 9.3e-09 64.7 107 38.3
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 1.6e-08 63.9 110 44.5
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 1.6e-08 63.9 107 43.0
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 1.6e-08 63.9 119 41.2
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 2.1e-08 63.5 174 35.1
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 2.1e-08 63.5 119 41.2
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 2.1e-08 63.5 116 41.4
BraA07t31250Z Brassica rapa HOM05D008527 ORTHO05D010701 2.7e-08 63.2 86 47.7
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 2.7e-08 63.2 107 43.0
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 2.7e-08 63.2 136 37.5
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 3.5e-08 62.8 113 38.1
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 3.5e-08 62.8 93 41.9
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 4.6e-08 62.4 109 38.5
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 4.6e-08 62.4 123 35.0
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 6.1e-08 62.0 179 34.6
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 6.1e-08 62.0 125 39.2
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 6.1e-08 62.0 132 34.8
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 7.9e-08 61.6 104 43.3
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 7.9e-08 61.6 117 36.8
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 7.9e-08 61.6 80 47.5
BcaB03g14805 Brassica carinata HOM05D008527 ORTHO05D010701 1.0e-07 61.2 139 40.3
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 1.8e-07 60.5 115 39.1
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 1.8e-07 60.5 107 38.3
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 1.8e-07 60.5 105 40.0
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 2.3e-07 60.1 105 38.1
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 2.3e-07 60.1 91 46.2
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 2.3e-07 60.1 109 39.4
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 3.0e-07 59.7 113 38.9
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 3.9e-07 59.3 167 34.1
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.9e-07 59.3 174 34.5
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.9e-07 59.3 174 33.9
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 3.9e-07 59.3 127 37.8
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 5.1e-07 58.9 105 40.0
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 8.7e-07 58.2 109 34.9
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 8.7e-07 58.2 104 40.4
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 8.7e-07 58.2 67 50.7
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.1e-06 57.8 160 33.1
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.1e-06 57.8 108 39.8
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.5e-06 57.4 110 37.3
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 1.5e-06 57.4 109 39.4
AUR62005388 Chenopodium quinoa HOM05D023191 ORTHO05D009245 1.9e-06 57.0 88 47.7
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 1.9e-06 57.0 118 36.4
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 1.9e-06 57.0 86 41.9
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.3e-06 56.2 108 38.9
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 3.3e-06 56.2 116 34.5
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 4.3e-06 55.8 117 47.0
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 4.3e-06 55.8 76 44.7
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 4.3e-06 55.8 77 44.2
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 7.4e-06 55.1 110 38.2
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 9.7e-06 54.7 107 36.4


User provided reference genes

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