Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 3110.1 1581 100.0
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2885.9 1586 92.9
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2885.1 1585 93.0
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2869.3 1591 92.1
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2867.4 1586 92.7
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2829.3 1601 89.9
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2775.7 1581 89.3
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2760.7 1587 89.0
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2758.4 1587 89.0
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2756.5 1583 89.1
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2721.8 1621 85.6
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2716.8 1599 86.2
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2712.2 1625 85.2
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2709.9 1583 87.9
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2706.4 1599 86.2
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2704.1 1582 87.7
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2682.1 1616 85.4
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2654.0 1584 86.8
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2606.6 1624 82.3
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2529.6 1612 80.3
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2371.7 1606 75.1
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2363.2 1588 74.9
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2358.9 1610 74.3
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2346.6 1598 73.7
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2345.1 1616 73.3
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2341.2 1607 74.7
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2335.1 1611 73.6
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2332.8 1604 73.9
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2314.7 1615 73.0
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2313.5 1600 73.3
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2299.2 1602 72.3
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2290.0 1613 71.9
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2283.4 1623 71.7
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2280.0 1606 72.1
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2278.4 1626 71.3
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2272.3 1623 70.9
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2262.6 1594 72.0
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2261.1 1594 72.4
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2251.9 1615 70.8
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2246.1 1604 71.0
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2241.8 1626 70.2
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2233.0 1615 70.3
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2232.2 1605 70.3
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2227.2 1618 69.6
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2226.8 1582 71.6
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2214.1 1612 69.9
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2212.6 1607 69.9
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2201.8 1604 70.2
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2201.8 1621 69.6
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2201.4 1637 68.4
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2191.8 1595 70.1
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2191.0 1610 68.7
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2188.7 1571 71.3
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2185.6 1641 68.4
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2184.1 1603 69.8
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2182.1 1592 70.4
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2178.3 1593 68.9
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2177.9 1602 69.3
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2174.4 1513 73.1
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2171.4 1592 69.7
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2165.6 1599 68.4
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2163.7 1617 68.5
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2162.5 1592 68.7
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2156.7 1605 69.0
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2155.6 1503 72.2
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2154.0 1597 68.7
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2152.9 1620 67.4
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2144.0 1911 60.6
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2135.1 1424 75.6
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2133.6 1615 66.6
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2130.1 1636 67.3
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2129.8 1615 66.1
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2125.9 1617 67.8
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2121.3 1598 67.6
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2104.3 1657 65.1
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2097.8 1572 67.5
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2090.5 1597 67.0
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2082.8 1608 65.8
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2067.7 1513 69.5
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2063.1 1426 72.9
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2008.8 1588 64.9
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2001.5 1589 64.6
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1973.0 1412 72.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1963.0 1558 65.0
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1934.5 1958 54.2
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1919.8 1582 62.2
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1902.9 1469 66.5
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1897.1 1391 70.2
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1890.5 1609 61.0
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1880.1 1622 61.3
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1879.4 1196 78.9
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1846.2 1570 61.1
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1841.2 1558 60.7
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1626.7 1547 57.3
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1614.7 1108 73.6
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1585.1 1217 66.9
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1441.0 1414 56.0
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1432.5 981 72.9
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1426.8 1369 57.0
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1394.8 977 71.8
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1378.2 1611 47.9
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1315.8 1623 46.2
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1305.8 1202 55.0
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1281.5 1565 45.2
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1175.6 1077 57.4
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1107.8 738 74.9
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1088.2 1574 43.3
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.7e-283 980.3 520 96.2
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 7.7e-268 928.3 629 75.2
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 7.3e-234 815.5 610 69.0
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 7.3e-226 788.9 537 74.1
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 7.1e-221 772.3 616 64.4
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 7.4e-218 762.3 663 61.4
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 3.2e-213 746.9 577 66.4
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.3e-203 714.9 504 71.4
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.5e-194 684.9 589 61.0
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.8e-193 680.6 598 60.5
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 5.5e-165 586.6 639 51.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 1.2e-159 568.9 553 55.0
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.2e-156 558.9 519 58.4
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.6e-154 551.2 553 54.1
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 4.0e-147 527.3 335 75.2
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 5.6e-141 506.9 475 57.3
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 3.4e-138 497.7 365 71.8
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 5.8e-138 496.9 332 77.7
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 4.9e-137 493.8 510 52.5
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 8.3e-137 493.0 412 63.3
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.4e-136 491.5 483 51.6
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.9e-123 446.4 312 73.1
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 9.9e-122 443.0 290 78.6
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 3.9e-110 404.4 318 66.0
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.3e-109 401.0 364 58.2
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.2e-103 382.9 407 52.1
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.3e-102 378.6 314 63.1
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 5.8e-98 364.0 377 52.0
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.7e-97 362.5 246 74.0
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 6.5e-81 307.4 246 62.2
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 6.7e-70 270.8 216 64.8
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.8e-65 255.0 155 78.7
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 5.0e-65 254.6 152 80.3
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 5.3e-59 234.6 142 78.9
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 7.0e-51 207.6 146 73.3
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.2e-50 206.8 142 64.8
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.5e-48 199.1 121 82.6
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.6e-45 189.1 212 51.9
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.7e-44 186.4 129 76.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-35 155.6 143 62.2
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-35 155.6 143 62.2
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-35 155.6 143 62.2
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-35 155.6 143 62.2
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-35 155.6 143 62.2
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-35 155.2 143 61.5
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.6e-34 153.3 143 61.5
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.7e-34 152.5 143 61.5
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 3.3e-32 145.6 93 75.3
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 4.7e-31 141.7 104 67.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 6.1e-31 141.4 85 77.6
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.2e-29 137.1 94 67.0
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-28 133.3 137 51.1
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-27 128.6 130 58.5
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-26 127.1 130 57.7
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.7e-25 123.2 96 63.5
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.9e-20 105.9 77 64.9
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.1e-19 102.1 105 56.2
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 5.4e-19 101.7 91 53.8
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 9.2e-19 100.9 91 52.7
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.0e-18 99.8 75 64.0
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 3.6e-15 89.0 82 57.3
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.5e-13 83.6 56 73.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 1.7e-12 80.1 47 70.2
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.9e-12 79.3 54 68.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 5.1e-09 68.6 55 58.2
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 7.3e-08 64.7 54 66.7
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 9.5e-08 64.3 44 68.2
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 4.7e-07 62.0 50 58.0


User provided reference genes

Program Settings