Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 4.9e-158 561.2 314 100.0
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 4.9e-158 561.2 314 100.0
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 4.9e-158 561.2 314 100.0
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.3e-153 546.6 314 98.4
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 2.3e-147 525.8 316 89.9
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.6e-145 519.6 317 89.6
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 9.1e-128 460.7 320 81.2
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.4e-115 420.2 329 71.1
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 8.8e-107 391.0 326 70.6
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.9e-102 375.9 321 69.5
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.9e-101 373.2 324 68.8
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 2.6e-98 362.8 322 69.9
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-95 354.0 315 65.4
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.7e-94 350.1 317 64.4
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.0e-90 336.7 315 60.0
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 8.3e-89 331.3 324 61.7
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 8.6e-86 321.2 315 58.4
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 6.0e-71 271.9 333 52.6
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 3.9e-70 269.2 342 50.3
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 3.9e-70 269.2 342 50.3
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 3.9e-70 269.2 342 50.3
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 2.2e-65 253.4 154 83.1
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 4.9e-65 252.3 337 50.7
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.9e-64 250.4 338 48.8
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 7.8e-63 245.0 345 50.1
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.3e-62 243.4 349 51.0
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 5.1e-62 242.3 338 48.2
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.1e-61 241.1 347 49.3
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 9.6e-61 238.0 335 52.5
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 2.1e-60 236.9 352 47.7
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 3.6e-60 236.1 341 46.6
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.4e-59 234.2 357 48.5
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.4e-59 234.2 345 52.2
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 5.3e-59 232.3 341 47.5
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 4.4e-58 229.2 325 47.7
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.3e-57 227.6 325 48.0
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.9e-57 226.5 353 44.2
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 4.9e-57 225.7 323 47.1
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 6.4e-57 225.3 340 46.8
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.1e-56 224.6 323 47.1
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-56 224.2 323 48.6
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 9.3e-56 221.5 356 43.5
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.6e-55 220.7 343 47.2
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.6e-55 220.7 353 43.1
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 2.1e-55 220.3 348 47.7
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 2.7e-55 219.9 352 45.7
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.5e-55 219.5 352 44.3
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 7.9e-55 218.4 350 48.0
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 7.9e-55 218.4 350 48.0
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 7.9e-55 218.4 350 48.0
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 7.9e-55 218.4 354 43.5
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.0e-54 218.0 352 40.9
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 2.3e-54 216.9 365 44.1
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 3.0e-54 216.5 328 45.4
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.9e-54 216.1 357 43.4
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 1.1e-53 214.5 345 43.2
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.3e-52 211.1 343 49.3
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.6e-52 210.7 338 45.0
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.1e-52 210.3 343 41.7
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 2.1e-52 210.3 337 42.4
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 3.6e-52 209.5 352 43.8
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 4.8e-52 209.1 344 45.1
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.2e-52 208.8 335 44.5
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.1e-51 208.0 332 41.9
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.8e-51 207.2 352 43.5
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 3.1e-51 206.5 352 47.7
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.3e-51 205.7 341 43.7
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 5.3e-51 205.7 365 40.3
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 6.9e-51 205.3 330 42.7
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 6.9e-51 205.3 345 39.7
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.9e-51 205.3 350 42.0
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 2.6e-50 203.4 360 39.4
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 3.4e-50 203.0 353 44.8
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 3.4e-50 203.0 342 47.4
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 4.5e-50 202.6 354 42.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 4.5e-50 202.6 340 40.9
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 7.6e-50 201.8 354 46.0
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.3e-49 201.1 339 46.6
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 3.8e-49 199.5 355 39.2
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.4e-48 197.6 364 39.8
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.4e-48 196.8 357 40.1
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 3.2e-48 196.4 359 42.6
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 7.1e-48 195.3 344 44.2
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 7.1e-48 195.3 343 44.0
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.6e-47 194.1 358 43.3
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 2.7e-47 193.4 334 43.4
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 2.7e-47 193.4 369 37.7
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 3.0e-46 189.9 339 43.1
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 6.7e-46 188.7 369 40.9
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.5e-45 187.6 344 43.3
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 4.3e-45 186.0 323 48.0
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.6e-45 185.7 344 42.7
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 7.4e-45 185.3 353 39.1
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.3e-44 184.5 351 39.6
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 2.8e-44 183.3 358 44.1
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 4.8e-44 182.6 358 41.6
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 8.1e-44 181.8 306 46.1
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.1e-43 181.4 304 47.7
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.4e-43 181.0 340 38.8
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.4e-43 181.0 332 47.3
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.4e-43 180.3 262 43.5
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.4e-43 180.3 347 43.8
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.2e-42 177.9 347 40.3
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.0e-42 177.2 331 43.5
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 2.0e-42 177.2 339 44.2
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 3.4e-42 176.4 352 44.3
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 7.6e-42 175.3 359 35.1
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 1.3e-41 174.5 339 39.2
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.2e-41 173.7 331 43.8
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 2.2e-41 173.7 363 39.7
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 2.9e-41 173.3 347 46.4
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.9e-41 172.6 315 43.5
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.1e-40 171.4 328 47.9
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.1e-40 171.4 362 39.5
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 7.1e-40 168.7 325 37.5
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 1.2e-39 167.9 266 44.0
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.2e-39 167.9 327 37.9
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.2e-39 167.9 318 42.8
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.7e-39 166.8 346 35.0
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.7e-39 166.8 273 45.1
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 1.0e-38 164.9 339 39.8
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.0e-38 164.9 347 40.1
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.3e-38 164.5 325 39.1
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.3e-38 164.5 318 42.5
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 1.5e-37 161.0 363 36.6
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 2.5e-37 160.2 327 41.6
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.3e-36 157.9 329 40.7
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 1.3e-36 157.9 260 46.5
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.3e-36 157.9 344 39.0
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.1e-36 157.1 327 40.7
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.7e-36 156.4 339 38.3
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.8e-36 156.0 315 39.0
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.1e-35 154.8 325 40.3
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.1e-35 154.8 336 37.5
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 3.1e-35 153.3 337 37.1
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 6.9e-35 152.1 248 41.1
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.5e-34 151.0 374 34.5
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.5e-34 151.0 310 36.1
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 6.5e-33 145.6 355 37.5
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 7.2e-32 142.1 339 32.7
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 2.7e-31 140.2 330 38.2
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 6.1e-31 139.0 240 46.7
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 6.1e-31 139.0 347 39.2
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.0e-30 138.3 343 33.8
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 1.0e-30 138.3 360 32.5
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 1.3e-30 137.9 350 37.1
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 3.9e-30 136.3 279 39.4
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 6.7e-30 135.6 240 38.8
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 5.7e-29 132.5 322 34.5
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.3e-28 131.3 316 36.1
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 3.7e-28 129.8 181 43.6
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 1.2e-26 124.8 384 34.1
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 3.4e-26 123.2 339 31.0
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 2.2e-25 120.6 240 37.1
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.9e-25 120.2 161 46.6
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 5.0e-25 119.4 398 29.6
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.1e-24 118.2 347 38.9
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 2.5e-24 117.1 328 34.8
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.5e-24 117.1 326 36.8
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 3.6e-23 113.2 96 62.5
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.6e-23 112.8 321 34.6
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.6e-23 112.8 330 40.0
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.4e-22 111.3 411 28.2
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 3.3e-21 106.7 252 35.3
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 1.8e-19 100.9 51 88.2
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 4.1e-19 99.8 322 35.7
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 4.5e-18 96.3 115 49.6
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 2.7e-15 87.0 94 51.1
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 2.7e-15 87.0 154 38.3
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-13 81.3 93 50.5
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 2.6e-13 80.5 176 34.1
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.1e-11 73.6 173 34.7
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.3e-09 68.2 172 32.0
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 3.8e-09 66.6 301 27.2
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 3.8e-09 66.6 192 28.1
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.2e-07 61.6 291 24.1
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.1e-07 60.8 298 25.2
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 3.6e-07 60.1 290 24.1
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.4e-06 58.2 282 27.0
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-06 57.8 259 26.3
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.8e-06 57.8 296 25.7
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.3e-06 57.4 302 24.5
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.0e-06 57.0 263 27.4
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.0e-06 56.6 319 25.4
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 6.7e-06 55.8 292 24.7
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 6.7e-06 55.8 290 27.2
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 8.8e-06 55.5 281 24.9


User provided reference genes

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