Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 4.1e-37 157.5 78 100.0
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 4.0e-32 141.0 78 92.3
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 4.0e-32 141.0 78 92.3
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 4.0e-32 141.0 78 92.3
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 4.4e-31 137.5 79 88.6
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 1.7e-30 135.6 79 87.3
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 1.2e-28 129.4 76 82.9
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 1.6e-28 129.0 76 85.5
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 4.2e-26 120.9 73 78.1
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 8.8e-24 113.2 60 86.7
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 3.4e-23 111.3 76 73.7
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 5.7e-23 110.5 76 72.4
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.8e-21 105.5 75 70.7
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 4.5e-20 100.9 75 69.3
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.0e-19 99.8 75 66.7
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.0e-19 99.8 75 66.7
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 2.9e-19 98.2 75 66.7
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 5.0e-19 97.4 75 61.3
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 6.6e-19 97.1 75 64.0
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 8.6e-19 96.7 75 65.3
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 8.6e-19 96.7 75 65.3
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 1.5e-18 95.9 76 61.8
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 1.9e-18 95.5 75 62.7
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 1.9e-18 95.5 82 59.8
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 1.9e-18 95.5 78 61.5
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 5.5e-18 94.0 75 62.7
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 5.5e-18 94.0 80 57.5
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 9.5e-18 93.2 77 58.4
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 1.2e-17 92.8 74 62.2
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 1.6e-17 92.4 80 56.2
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 1.6e-17 92.4 75 60.0
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 2.1e-17 92.0 75 56.0
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 2.8e-17 91.7 59 71.2
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 2.8e-17 91.7 59 71.2
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 6.1e-17 90.5 72 61.1
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 6.1e-17 90.5 85 54.1
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 6.1e-17 90.5 78 57.7
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 6.1e-17 90.5 75 58.7
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 8.0e-17 90.1 75 58.7
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 8.0e-17 90.1 75 60.0
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 8.0e-17 90.1 75 61.3
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 1.0e-16 89.7 74 60.8
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 1.8e-16 89.0 80 57.5
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 2.3e-16 88.6 78 61.5
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 3.0e-16 88.2 74 58.1
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 3.0e-16 88.2 76 59.2
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 3.0e-16 88.2 75 58.7
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 4.0e-16 87.8 78 59.0
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 5.2e-16 87.4 72 61.1
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 5.2e-16 87.4 75 57.3
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 6.8e-16 87.0 78 56.4
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 6.8e-16 87.0 75 57.3
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 6.8e-16 87.0 75 53.3
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 6.8e-16 87.0 75 53.3
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 6.8e-16 87.0 76 59.2
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 1.2e-15 86.3 75 54.7
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 1.2e-15 86.3 55 74.5
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 1.2e-15 86.3 75 56.0
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.5e-15 85.9 76 57.9
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 3.4e-15 84.7 77 59.7
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 3.4e-15 84.7 79 57.0
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 3.4e-15 84.7 75 54.7
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 4.4e-15 84.3 76 57.9
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 5.7e-15 84.0 75 56.0
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 9.8e-15 83.2 75 52.0
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 1.7e-14 82.4 80 51.2
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 1.7e-14 82.4 77 54.5
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 1.7e-14 82.4 77 54.5
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 2.2e-14 82.0 54 70.4
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 2.2e-14 82.0 56 64.3
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 2.2e-14 82.0 77 57.1
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 2.9e-14 81.6 77 57.1
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 3.7e-14 81.3 75 57.3
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 4.9e-14 80.9 74 58.1
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 6.3e-14 80.5 75 54.7
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 6.3e-14 80.5 55 67.3
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 6.3e-14 80.5 79 51.9
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 1.8e-13 79.0 71 53.5
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 2.4e-13 78.6 50 72.0
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 3.2e-13 78.2 78 53.8
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 3.2e-13 78.2 54 64.8
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 4.1e-13 77.8 51 68.6
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 4.1e-13 77.8 76 53.9
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 9.2e-13 76.6 71 54.9
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 1.7e-11 72.4 88 46.6
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 2.9e-11 71.6 55 61.8
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 1.1e-10 69.7 119 41.2
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 3.6e-09 64.7 116 35.3
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 6.2e-09 63.9 42 71.4
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 3.4e-07 58.2 37 70.3


User provided reference genes

Program Settings