Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 4.7e-55 217.6 109 100.0
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 3.2e-40 168.3 87 93.1
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 3.2e-40 168.3 87 93.1
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 3.2e-40 168.3 87 93.1
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 3.2e-40 168.3 87 93.1
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 7.2e-40 167.2 87 92.0
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 2.7e-39 165.2 87 90.8
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 4.7e-39 164.5 87 90.8
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 9.7e-37 156.8 85 89.4
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 1.3e-36 156.4 86 88.4
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 1.3e-36 156.4 86 88.4
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 1.3e-36 156.4 86 88.4
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 1.7e-36 156.0 85 88.2
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 2.2e-36 155.6 87 86.2
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 2.2e-36 155.6 87 86.2
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 2.2e-36 155.6 93 83.9
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 4.8e-36 154.5 87 85.1
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 1.4e-35 152.9 84 88.1
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 1.4e-35 152.9 84 88.1
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 3.1e-35 151.8 85 85.9
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 7.7e-34 147.1 88 81.8
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 3.2e-32 141.7 79 87.3
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 1.8e-30 136.0 94 73.4
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 5.2e-30 134.4 87 77.0
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 6.8e-30 134.0 84 75.0
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 8.8e-30 133.7 83 79.5
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 1.5e-29 132.9 85 74.1
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 3.4e-29 131.7 83 77.1
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 4.4e-29 131.3 84 77.4
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 7.5e-29 130.6 85 76.5
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 1.3e-28 129.8 87 73.6
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 1.7e-28 129.4 86 72.1
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 2.2e-28 129.0 83 74.7
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 2.8e-28 128.6 82 78.0
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 2.8e-28 128.6 83 77.1
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 2.8e-28 128.6 84 75.0
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 4.8e-28 127.9 85 74.1
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 4.8e-28 127.9 87 72.4
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 4.8e-28 127.9 80 78.8
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 4.8e-28 127.9 85 74.1
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 6.3e-28 127.5 84 76.2
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 6.3e-28 127.5 83 71.1
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 6.3e-28 127.5 83 75.9
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 8.3e-28 127.1 83 74.7
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 1.1e-27 126.7 83 72.3
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 1.1e-27 126.7 86 68.6
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 1.1e-27 126.7 77 77.9
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 1.8e-27 125.9 85 75.3
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 1.8e-27 125.9 85 75.3
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 1.8e-27 125.9 82 75.6
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 1.8e-27 125.9 84 75.0
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 1.8e-27 125.9 84 75.0
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 1.8e-27 125.9 82 73.2
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 2.4e-27 125.6 86 70.9
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 2.4e-27 125.6 87 70.1
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 3.1e-27 125.2 84 73.8
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 3.1e-27 125.2 84 73.8
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 3.1e-27 125.2 84 72.6
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 3.1e-27 125.2 86 69.8
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 3.1e-27 125.2 87 65.5
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 4.1e-27 124.8 76 75.0
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 5.4e-27 124.4 88 72.7
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 5.4e-27 124.4 83 72.3
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 7.0e-27 124.0 80 75.0
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 7.0e-27 124.0 85 74.1
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 9.1e-27 123.6 97 67.0
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 1.2e-26 123.2 82 74.4
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 1.2e-26 123.2 83 74.7
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 1.2e-26 123.2 86 72.1
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 1.2e-26 123.2 86 68.6
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 1.2e-26 123.2 87 71.3
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 1.2e-26 123.2 83 72.3
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 1.6e-26 122.9 90 68.9
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 1.6e-26 122.9 82 72.0
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 2.0e-26 122.5 85 74.1
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 2.0e-26 122.5 82 73.2
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 2.0e-26 122.5 88 69.3
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 2.0e-26 122.5 82 72.0
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 2.7e-26 122.1 84 72.6
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 3.5e-26 121.7 82 72.0
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 4.5e-26 121.3 83 73.5
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 5.9e-26 120.9 78 71.8
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 5.9e-26 120.9 86 68.6
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 5.9e-26 120.9 85 70.6
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 5.9e-26 120.9 86 70.9
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 1.0e-25 120.2 80 72.5
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.0e-25 120.2 83 73.5
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 1.0e-25 120.2 73 76.7
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 1.3e-25 119.8 74 74.3
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 1.7e-25 119.4 81 66.7
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 1.7e-25 119.4 80 72.5
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 2.3e-25 119.0 87 69.0
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 2.3e-25 119.0 87 69.0
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 2.3e-25 119.0 87 69.0
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 2.9e-25 118.6 82 73.2
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 5.0e-25 117.9 83 71.1
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 5.0e-25 117.9 93 68.8
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 5.0e-25 117.9 89 66.3
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 8.6e-25 117.1 87 67.8
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 1.1e-24 116.7 83 69.9
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 2.5e-24 115.5 76 73.7
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 3.3e-24 115.2 89 64.0
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 4.2e-24 114.8 98 63.3
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.2e-23 113.2 98 62.2
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.4e-22 109.8 100 59.0
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 1.4e-22 109.8 104 58.7
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 2.3e-22 109.0 67 77.6
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 1.5e-21 106.3 78 66.7
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 1.5e-21 106.3 71 71.8
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 3.4e-21 105.1 68 76.5
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 3.4e-21 105.1 67 74.6
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 4.4e-21 104.8 71 73.2
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 5.7e-21 104.4 68 72.1
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 7.5e-21 104.0 69 73.9
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 9.8e-21 103.6 67 77.6
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 2.2e-20 102.4 65 73.8
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 2.8e-20 102.1 70 67.1
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 1.1e-19 100.1 70 70.0
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 3.8e-17 91.7 74 58.1
Zm00001eb102630 Zea mays HOM05D005828 ORTHO05D006822 1.8e-14 82.8 74 58.1
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 6.8e-14 80.9 87 52.9
Pp3c4_22520 Physcomitrium patens HOM05D005828 ORTHO05D006822 1.2e-13 80.1 70 52.9
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 2.2e-12 75.9 62 56.5
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 2.2e-12 75.9 55 70.9
Lalb_Chr17g0343871 Lupinus albus HOM05D005828 ORTHO05D006822 1.1e-11 73.6 47 74.5
BcaB03g11887 Brassica carinata HOM05D005828 ORTHO05D006822 2.0e-10 69.3 48 70.8
BcaNung06341 Brassica carinata HOM05D005828 ORTHO05D006822 2.0e-10 69.3 48 70.8
BcaNung06770 Brassica carinata HOM05D005828 ORTHO05D006822 2.0e-10 69.3 48 70.8
AagrBONN_evm.TU.Sc2ySwM_368.871 Anthoceros agrestis HOM05D005828 ORTHO05D006822 1.0e-09 67.0 63 55.6
SMO232G0111 Selaginella moellendorffii HOM05D005828 ORTHO05D006822 2.3e-09 65.9 70 44.3
BcaB01g03422 Brassica carinata HOM05D037851 ORTHO05D006822 3.9e-09 65.1 87 46.0
BcaB02g06981 Brassica carinata HOM05D037851 ORTHO05D006822 3.9e-09 65.1 87 46.0
BcaB02g06986 Brassica carinata HOM05D037851 ORTHO05D006822 3.9e-09 65.1 87 46.0
MD03G1196900 Malus domestica HOM05D005828 ORTHO05D006822 3.9e-09 65.1 49 63.3


User provided reference genes

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