Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 4.5e-172 607.8 306 100.0
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 9.8e-18 95.1 63 82.5
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 7.7e-15 85.5 51 82.4
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-14 84.7 51 80.4
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-14 84.7 51 80.4
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.7e-14 84.3 51 78.4
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-13 80.9 51 74.5
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.9e-13 80.9 51 74.5
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.9e-13 80.9 51 74.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.9e-13 80.9 51 74.5
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.5e-13 80.5 51 72.5
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 5.5e-13 79.3 46 87.0
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 4.7e-12 76.3 51 70.6
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 6.1e-12 75.9 68 55.9
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 8.0e-12 75.5 51 70.6
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.0e-11 75.1 51 68.6
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.4e-11 74.7 51 70.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.8e-11 74.3 51 72.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.8e-11 74.3 69 58.0
A01p26440 Brassica napus HOM05D000108 ORTHO05D001149 1.8e-11 74.3 49 77.6
BolC1t03310H Brassica oleracea HOM05D000108 ORTHO05D001149 1.8e-11 74.3 49 77.6
BraA01t02568Z Brassica rapa HOM05D000108 ORTHO05D001149 1.8e-11 74.3 49 77.6
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.8e-11 74.3 51 72.5
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 1.8e-11 74.3 50 72.0
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.8e-11 74.3 67 58.2
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.8e-11 74.3 56 62.5
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.8e-11 74.3 51 66.7
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 3.0e-11 73.6 51 70.6
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 3.0e-11 73.6 51 68.6
BcaC09g49719 Brassica carinata HOM05D000108 ORTHO05D001149 4.0e-11 73.2 49 75.5
C01p33640 Brassica napus HOM05D000108 ORTHO05D001149 4.0e-11 73.2 49 75.5
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 4.0e-11 73.2 51 68.6
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 4.0e-11 73.2 51 68.6
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.0e-11 73.2 51 66.7
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 4.0e-11 73.2 51 66.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 5.2e-11 72.8 51 68.6
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 5.2e-11 72.8 51 66.7
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 5.2e-11 72.8 51 66.7
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 5.2e-11 72.8 51 68.6
C06p10580 Brassica napus HOM05D000108 ORTHO05D011597 6.8e-11 72.4 84 47.6
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 6.8e-11 72.4 51 66.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 6.8e-11 72.4 51 66.7
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 6.8e-11 72.4 73 54.8
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 6.8e-11 72.4 51 66.7
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 6.8e-11 72.4 51 66.7
BcaB05g23477 Brassica carinata HOM05D000108 ORTHO05D001149 8.9e-11 72.0 49 75.5
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.9e-11 72.0 51 72.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 8.9e-11 72.0 51 66.7
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 1.2e-10 71.6 111 43.2
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.2e-10 71.6 51 72.5
Sp5g15680 Schrenkiella parvula HOM05D000108 ORTHO05D001149 1.2e-10 71.6 49 73.5
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.2e-10 71.6 51 68.6
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.5e-10 71.2 51 68.6
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.5e-10 71.2 51 68.6
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.5e-10 71.2 51 72.5
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.0e-10 70.9 51 66.7
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 2.0e-10 70.9 51 70.6
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-10 70.9 51 70.6
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.4e-10 70.1 51 70.6
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.4e-10 70.1 51 64.7
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 3.4e-10 70.1 51 64.7
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 3.4e-10 70.1 51 68.6
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 4.4e-10 69.7 56 62.5
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 4.4e-10 69.7 51 62.7
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 5.7e-10 69.3 51 66.7
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 7.5e-10 68.9 51 64.7
Aa31LG4G15070 Aethionema arabicum HOM05D000108 ORTHO05D001149 7.5e-10 68.9 49 71.4
BcaC08g43639 Brassica carinata HOM05D000108 ORTHO05D011597 7.5e-10 68.9 77 54.5
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 7.5e-10 68.9 51 60.8
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 7.5e-10 68.9 51 60.8
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 7.5e-10 68.9 51 62.7
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 7.5e-10 68.9 51 64.7
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 7.5e-10 68.9 51 64.7
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 7.5e-10 68.9 51 64.7
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 7.5e-10 68.9 51 64.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 9.8e-10 68.6 74 52.7
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 9.8e-10 68.6 51 66.7
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 9.8e-10 68.6 51 64.7
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 9.8e-10 68.6 51 64.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.3e-09 68.2 51 62.7
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.3e-09 68.2 51 62.7
CARHR154150 Cardamine hirsuta HOM05D000108 ORTHO05D001149 1.7e-09 67.8 49 71.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.7e-09 67.8 51 60.8
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.7e-09 67.8 48 66.7
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.2e-09 67.4 51 60.8
AL5G24530 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 2.2e-09 67.4 49 69.4
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.2e-09 67.4 51 62.7
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.2e-09 67.4 48 68.8
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 4.9e-09 66.2 46 69.6
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 6.3e-09 65.9 64 54.7
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 6.3e-09 65.9 56 60.7
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 6.3e-09 65.9 51 60.8
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 8.3e-09 65.5 52 59.6
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 8.3e-09 65.5 51 62.7
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 8.3e-09 65.5 44 68.2
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.8e-08 64.3 51 58.8
BolC2t09876H Brassica oleracea HOM05D000313 ORTHO05D000065 2.4e-08 63.9 61 59.0
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.4e-08 63.9 48 66.7
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 7.0e-08 62.4 51 62.7
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 7.0e-08 62.4 51 52.9
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.0e-08 62.4 46 69.6
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 7.0e-08 62.4 51 58.8
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 7.0e-08 62.4 51 54.9
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 9.2e-08 62.0 76 47.4
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 9.2e-08 62.0 51 51.0
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.2e-07 61.6 75 46.7
Aa31LG4G9390 Aethionema arabicum HOM05D000108 ORTHO05D001149 1.6e-07 61.2 51 60.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.6e-07 61.2 51 52.9
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 2.0e-07 60.8 46 67.4
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 2.0e-07 60.8 46 67.4
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.7e-07 60.5 53 56.6
Aa31sc48G40 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.5e-07 60.1 52 59.6
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 3.5e-07 60.1 51 54.9
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 4.6e-07 59.7 48 58.3
THA.LOC104799469 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 4.6e-07 59.7 49 61.2
C04p06280 Brassica napus HOM05D000313 ORTHO05D000065 5.9e-07 59.3 60 56.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 5.9e-07 59.3 51 60.8
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 5.9e-07 59.3 53 56.6
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 7.8e-07 58.9 51 49.0
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 7.8e-07 58.9 50 56.0
BcaB08g35222 Brassica carinata HOM05D000313 ORTHO05D000065 1.3e-06 58.2 51 56.9
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.3e-06 58.2 78 41.0
C03p49020 Brassica napus HOM05D000313 ORTHO05D000065 1.7e-06 57.8 51 58.8
BolC3t17179H Brassica oleracea HOM05D000313 ORTHO05D000065 1.7e-06 57.8 51 58.8
Thhalv10002384m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 1.7e-06 57.8 49 61.2
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.7e-06 57.8 51 51.0
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 3.9e-06 56.6 51 51.0
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 3.9e-06 56.6 51 52.9
BolC3t17676H Brassica oleracea HOM05D000313 ORTHO05D000065 5.0e-06 56.2 51 54.9
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 5.0e-06 56.2 78 39.7
BcaC05g28890 Brassica carinata HOM05D000313 ORTHO05D000065 6.6e-06 55.8 51 54.9
C05p50150 Brassica napus HOM05D000313 ORTHO05D000065 6.6e-06 55.8 51 54.9
BolC5t33765H Brassica oleracea HOM05D000313 ORTHO05D000065 6.6e-06 55.8 51 54.9
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 6.6e-06 55.8 51 52.9
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 6.6e-06 55.8 51 52.9
Cpa.g.sc139.8 Carica papaya HOM05D000108 ORTHO05D001149 8.6e-06 55.5 48 60.4
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.6e-06 55.5 48 62.5
MD03G1105800 Malus domestica HOM05D000108 ORTHO05D001149 8.6e-06 55.5 48 60.4


User provided reference genes

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