Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 8.1e-199 696.8 338 100.0
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.2e-178 629.8 348 90.2
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 3.5e-178 628.2 344 91.0
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 6.0e-178 627.5 337 92.3
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 6.0e-178 627.5 337 92.3
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 1.3e-177 626.3 337 92.0
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 8.2e-175 617.1 347 87.3
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 3.2e-171 605.1 346 85.3
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 3.3e-168 595.1 344 84.0
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.6e-167 592.8 336 85.7
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 2.8e-167 592.0 338 86.1
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.5e-165 586.3 342 83.0
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 1.6e-162 576.2 322 87.6
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 1.1e-158 563.5 332 81.3
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 9.1e-158 560.5 302 87.7
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 1.4e-153 546.6 343 78.4
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 7.7e-149 530.8 333 80.5
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 1.5e-144 516.5 334 76.0
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.8e-142 509.6 345 72.5
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.4e-142 509.2 335 75.5
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 4.5e-141 505.0 346 71.4
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 1.5e-139 500.0 348 71.3
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.5e-139 500.0 336 73.2
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.9e-139 499.6 335 72.8
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.5e-139 499.2 333 73.9
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 2.5e-139 499.2 345 70.4
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 3.2e-139 498.8 334 72.5
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 3.2e-139 498.8 336 72.6
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 5.5e-139 498.0 346 69.7
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 9.4e-139 497.3 335 72.8
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 6.1e-138 494.6 334 73.4
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 6.1e-138 494.6 341 70.7
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 8.0e-138 494.2 335 72.8
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.0e-137 493.8 334 72.8
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.4e-137 493.4 334 73.4
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 2.3e-137 492.7 336 71.7
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 3.0e-137 492.3 340 70.6
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 4.0e-137 491.9 333 72.1
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 5.2e-137 491.5 364 67.0
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 5.2e-137 491.5 334 72.2
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 6.8e-137 491.1 333 72.1
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 6.8e-137 491.1 333 71.5
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 5.7e-136 488.0 334 71.0
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 9.8e-136 487.3 338 68.6
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 1.7e-135 486.5 336 70.8
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.7e-135 486.5 334 71.9
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 2.2e-135 486.1 334 70.7
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 2.2e-135 486.1 334 71.6
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 2.8e-135 485.7 333 70.3
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.8e-135 485.7 338 70.4
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 6.3e-135 484.6 333 70.9
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 8.3e-135 484.2 349 69.3
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.8e-134 483.0 345 68.7
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.8e-134 483.0 338 71.0
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 2.4e-134 482.6 335 70.4
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 2.4e-134 482.6 334 71.3
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.4e-134 482.6 335 71.9
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.1e-134 482.3 333 70.6
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 9.1e-134 480.7 338 68.6
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 9.1e-134 480.7 338 70.7
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.2e-133 480.3 345 67.5
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.6e-133 479.9 347 67.1
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 2.0e-133 479.6 351 68.1
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.7e-133 479.2 345 67.8
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.7e-133 479.2 334 71.9
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 3.5e-133 478.8 336 70.8
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.3e-132 476.9 346 67.6
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 6.5e-132 474.6 365 65.5
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 6.5e-132 474.6 338 69.8
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.5e-131 473.4 347 66.0
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.5e-131 473.4 346 67.1
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 3.2e-131 472.2 333 74.8
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.2e-131 472.2 346 66.8
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 4.2e-131 471.9 342 70.2
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 5.5e-131 471.5 336 69.9
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 9.5e-131 470.7 336 69.6
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.2e-130 470.3 334 68.6
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 2.7e-130 469.2 336 68.5
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.4e-129 466.8 339 69.0
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 2.3e-129 466.1 334 68.3
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 1.5e-128 463.4 394 60.7
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 2.0e-128 463.0 350 67.1
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 2.0e-128 463.0 335 68.7
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 2.0e-128 463.0 345 66.1
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 9.8e-128 460.7 339 67.3
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.2e-127 459.5 338 66.3
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 2.2e-127 459.5 335 67.8
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 2.8e-127 459.1 326 68.4
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 3.7e-127 458.8 338 66.0
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 4.9e-127 458.4 325 68.0
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 6.3e-127 458.0 327 68.2
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 6.3e-127 458.0 334 67.1
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 9.2e-126 454.1 333 67.6
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 1.2e-125 453.8 337 67.7
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 1.9e-123 446.4 301 73.8
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 5.6e-123 444.9 293 73.0
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 7.3e-123 444.5 338 64.5
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 7.3e-123 444.5 336 65.2
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.6e-122 443.4 331 67.4
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 2.8e-122 442.6 334 64.4
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 1.4e-121 440.3 340 64.4
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 4.0e-121 438.7 332 65.7
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 2.1e-114 416.4 340 62.9
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 1.7e-111 406.8 232 80.2
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 3.7e-111 405.6 248 75.0
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 4.9e-111 405.2 248 74.6
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.9e-110 403.3 233 84.1
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 7.0e-110 401.4 246 75.2
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 1.0e-100 370.9 304 59.9
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.7e-100 370.2 329 58.7
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 3.4e-96 355.9 334 55.4
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 4.9e-95 352.1 242 74.0
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.5e-88 330.5 243 64.2
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.3e-83 311.6 328 52.4
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.6e-82 310.5 233 68.7
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 2.0e-80 303.5 231 67.5
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.6e-80 303.1 242 63.6
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.6e-80 303.1 242 63.6
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.4e-80 302.8 232 69.0
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 2.1e-66 256.9 173 71.1
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 7.1e-62 241.9 246 49.2
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 3.7e-58 229.6 162 68.5
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.7e-55 220.7 186 63.4
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 8.5e-55 218.4 187 61.5
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.1e-53 213.8 174 59.2
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 1.3e-52 211.1 199 53.3
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.0e-48 197.2 160 63.1
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 2.3e-28 130.6 73 83.6
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 3.7e-26 123.2 79 73.4
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 3.0e-20 103.6 57 75.4
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 9.2e-09 65.5 53 62.3


User provided reference genes

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