Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 4.0e-104 381.3 180 100.0
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 4.6e-100 367.9 180 96.1
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.3e-94 349.7 180 92.8
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.3e-94 349.7 180 93.3
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 3.8e-94 348.2 182 92.3
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 7.9e-92 340.5 183 91.3
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 3.0e-91 338.6 184 89.1
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 5.1e-91 337.8 184 90.8
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.9e-90 335.9 183 90.7
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 4.8e-89 331.3 185 89.7
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 2.0e-87 325.9 180 87.2
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 7.6e-87 323.9 180 86.7
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 9.9e-87 323.6 180 86.7
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.3e-86 323.2 180 86.7
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.2e-86 322.4 181 89.0
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.1e-85 320.1 181 85.1
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.3e-81 306.6 185 79.5
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 1.0e-78 297.0 184 76.6
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.0e-78 297.0 182 77.5
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.0e-78 297.0 184 76.6
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 8.4e-78 293.9 182 76.9
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 1.1e-77 293.5 181 76.2
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.9e-77 292.7 189 73.5
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 5.5e-77 291.2 185 75.1
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 5.5e-77 291.2 163 82.2
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.6e-76 289.7 181 75.1
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 4.6e-76 288.1 163 81.0
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 6.0e-76 287.7 164 81.7
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.3e-75 286.6 163 81.6
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.8e-75 286.2 186 75.3
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 3.9e-75 285.0 192 71.4
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 6.7e-75 284.3 147 85.0
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.1e-74 283.5 157 80.9
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 1.1e-74 283.5 158 82.3
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.1e-74 283.5 163 81.0
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.5e-74 283.1 185 72.4
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 1.9e-74 282.7 147 85.0
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.9e-74 282.7 157 81.5
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.9e-74 282.7 152 86.2
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 3.3e-74 282.0 173 76.3
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 4.3e-74 281.6 169 77.5
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 4.3e-74 281.6 166 78.9
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 5.7e-74 281.2 189 75.1
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 5.7e-74 281.2 180 74.4
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 5.7e-74 281.2 150 86.0
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 7.4e-74 280.8 157 80.9
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 7.4e-74 280.8 180 73.9
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 7.4e-74 280.8 163 79.8
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 9.6e-74 280.4 179 73.7
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.3e-73 280.0 180 73.9
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.3e-73 280.0 157 81.5
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.6e-73 279.6 165 79.4
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.6e-73 279.6 188 70.7
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 2.1e-73 279.3 147 84.4
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 2.1e-73 279.3 183 73.8
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 4.8e-73 278.1 158 86.1
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 8.2e-73 277.3 183 71.6
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.1e-72 276.9 182 69.8
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.1e-72 276.9 182 69.8
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 1.1e-72 276.9 143 86.7
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.8e-72 276.2 178 70.2
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 2.4e-72 275.8 181 71.8
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 3.1e-72 275.4 154 81.8
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 3.1e-72 275.4 154 81.8
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 3.1e-72 275.4 149 82.6
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 3.1e-72 275.4 164 76.8
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 4.1e-72 275.0 182 72.0
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 6.9e-72 274.2 144 84.7
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 9.0e-72 273.9 218 65.1
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.2e-71 273.5 145 85.5
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.2e-71 273.5 145 85.5
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 1.5e-71 273.1 157 79.0
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 3.4e-71 271.9 145 80.7
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 1.3e-70 270.0 183 71.0
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.3e-70 270.0 180 71.1
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.7e-70 269.6 177 70.6
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 2.2e-70 269.2 184 67.9
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.9e-70 268.9 142 83.8
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.1e-69 266.9 155 80.0
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.5e-69 265.8 182 71.4
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 5.5e-69 264.6 182 74.2
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.1e-68 262.7 154 76.6
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 2.7e-68 262.3 142 81.0
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 2.7e-68 262.3 142 81.0
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.0e-67 260.4 141 79.4
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.0e-67 258.8 143 82.5
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.7e-66 253.8 159 73.0
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.8e-64 249.6 143 76.9
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.3e-62 243.4 158 72.8
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.9e-62 242.3 140 73.6
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 3.8e-62 241.9 126 84.9
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.4e-61 240.0 146 71.9
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 3.2e-61 238.8 155 73.5
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 5.5e-61 238.0 140 73.6
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.2e-60 236.9 139 79.9
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 4.6e-60 235.0 159 72.3
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 6.1e-60 234.6 150 74.0
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 5.1e-59 231.5 119 85.7
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 8.8e-59 230.7 123 83.7
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 8.8e-59 230.7 127 80.3
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 7.4e-58 227.6 123 81.3
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 1.3e-57 226.9 127 80.3
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 5.3e-56 221.5 140 68.6
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 4.5e-55 218.4 151 71.5
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 5.9e-55 218.0 168 64.3
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 3.8e-54 215.3 128 77.3
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 7.2e-53 211.1 120 79.2
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 5.2e-51 204.9 119 79.8
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.0e-47 193.0 144 64.6
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.2e-46 189.5 99 85.9
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 4.0e-43 178.7 165 52.1
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 4.4e-42 175.3 185 50.3
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.1e-40 170.6 93 83.9
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.4e-40 169.5 151 54.3
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 9.1e-40 167.5 146 53.4
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 3.5e-39 165.6 91 82.4
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.0e-38 164.1 140 55.7
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 2.2e-38 162.9 168 49.4
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.1e-37 160.6 89 80.9
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.1e-37 160.6 116 65.5
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.8e-33 146.0 72 95.8
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 3.7e-33 145.6 157 51.0
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 6.3e-33 144.8 169 42.6
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.6e-31 140.2 138 50.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.7e-31 139.4 70 94.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 6.5e-30 134.8 85 71.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.5e-29 132.9 185 49.2
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 2.5e-29 132.9 59 98.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 4.4e-26 122.1 133 45.9
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.2e-23 114.0 53 94.3
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 8.6e-22 107.8 118 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 6.4e-17 91.7 85 54.1
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 7.3e-13 78.2 155 31.0
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 6.2e-12 75.1 79 54.4
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.3e-11 73.2 120 40.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.2e-10 70.9 141 32.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 4.9e-09 65.5 31 83.9
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 2.3e-06 56.6 154 24.7


User provided reference genes

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