Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 7.8e-109 397.1 199 100.0
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.6e-90 336.3 199 85.9
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 3.2e-86 322.0 194 84.0
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 4.2e-86 321.6 200 83.0
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 2.7e-85 318.9 194 84.5
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 3.5e-85 318.5 194 83.0
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 4.6e-85 318.2 199 79.4
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 1.0e-84 317.0 199 80.9
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 7.6e-80 300.8 199 77.9
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.0e-79 300.4 199 78.4
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.4e-78 296.6 193 77.7
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 6.1e-69 264.6 192 74.0
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 7.9e-69 264.2 188 71.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 4.8e-66 255.0 153 85.6
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 4.1e-65 251.9 198 66.7
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.3e-63 246.9 146 84.2
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 3.8e-63 245.4 146 84.9
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.5e-59 233.4 182 69.8
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 7.4e-59 231.1 185 70.8
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 7.4e-59 231.1 185 70.8
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 4.2e-54 215.3 194 59.3
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.7e-53 212.6 193 58.5
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.8e-52 209.9 191 61.3
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 3.0e-52 209.1 193 57.5
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 5.2e-52 208.4 181 59.1
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 6.7e-52 208.0 181 60.8
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.6e-51 206.1 180 61.7
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.6e-51 206.1 180 61.7
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 4.4e-51 205.3 180 61.1
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 7.4e-51 204.5 184 59.2
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 4.8e-50 201.8 193 58.0
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 6.3e-50 201.4 170 60.0
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 8.2e-50 201.1 183 58.5
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.4e-49 199.5 181 58.0
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 2.4e-49 199.5 175 60.6
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 4.1e-49 198.7 180 60.6
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 9.1e-49 197.6 184 55.4
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.2e-48 197.2 199 54.8
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.6e-48 196.1 179 54.7
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 3.5e-48 195.7 190 57.4
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 4.5e-48 195.3 191 55.0
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 5.9e-48 194.9 174 58.0
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 7.7e-48 194.5 189 53.4
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 7.7e-48 194.5 164 62.8
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 7.7e-48 194.5 164 62.2
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.7e-47 193.4 173 56.6
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 2.2e-47 193.0 184 55.4
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 2.2e-47 193.0 182 58.8
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.9e-47 192.6 166 57.8
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 2.9e-47 192.6 190 56.8
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.9e-47 192.6 181 58.6
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 3.8e-47 192.2 182 57.1
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.8e-47 192.2 158 62.7
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 3.2e-46 189.1 182 58.2
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 5.5e-46 188.3 165 59.4
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 7.2e-46 188.0 179 58.7
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 9.4e-46 187.6 162 63.6
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.6e-45 185.7 161 60.2
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 3.6e-45 185.7 184 54.9
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.8e-44 183.3 157 60.5
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.8e-44 183.3 187 55.1
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 3.0e-44 182.6 149 63.8
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 3.0e-44 182.6 164 60.4
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 4.0e-44 182.2 152 63.8
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 4.0e-44 182.2 182 57.1
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 6.7e-44 181.4 163 55.8
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.2e-43 180.6 188 55.9
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.5e-43 180.3 182 54.9
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 2.0e-43 179.9 166 57.8
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.0e-43 179.9 182 56.6
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.0e-43 179.9 158 61.4
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 5.7e-43 178.3 176 55.7
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.7e-43 178.3 160 58.1
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.3e-42 177.2 175 54.3
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.3e-42 177.2 182 52.7
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.2e-42 176.4 182 51.6
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.2e-42 176.4 138 66.7
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.8e-42 176.0 182 56.0
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 3.7e-42 175.6 168 58.3
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.7e-42 175.6 187 53.5
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.1e-41 174.1 182 52.7
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.1e-41 174.1 161 59.6
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.8e-41 173.3 177 54.2
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.4e-41 172.9 201 48.3
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.1e-41 172.6 141 63.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 4.1e-41 172.2 140 65.7
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 5.3e-41 171.8 161 59.6
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 5.3e-41 171.8 182 50.5
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 9.1e-41 171.0 183 52.5
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.6e-40 170.2 155 57.4
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-40 169.5 187 52.4
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-40 169.5 187 52.4
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-40 169.5 187 52.4
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-40 168.7 186 52.7
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 7.7e-40 167.9 175 51.4
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 7.7e-40 167.9 165 58.2
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.7e-39 166.8 168 53.0
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.7e-39 166.8 188 51.6
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 6.5e-39 164.9 184 52.7
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 8.5e-39 164.5 136 60.3
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.5e-38 163.7 150 58.7
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 1.5e-38 163.7 262 40.5
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.5e-38 162.9 196 46.9
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.0e-36 157.5 136 58.8
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 5.7e-35 151.8 136 58.1
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 7.5e-35 151.4 140 60.7
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 7.5e-35 151.4 183 47.0
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 9.8e-35 151.0 161 51.6
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 5.4e-33 145.2 152 51.3
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 7.0e-33 144.8 173 48.6
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 3.8e-31 139.0 124 59.7
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.1e-30 137.5 144 54.9
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.6e-29 133.7 139 56.1
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.0e-28 129.4 130 52.3
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 2.2e-26 123.2 157 45.9
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.0e-24 116.7 93 64.5
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.9e-22 110.2 111 53.2
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 2.1e-21 106.7 104 54.8
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 2.3e-20 103.2 121 48.8
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 8.9e-20 101.3 186 37.6
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 2.6e-19 99.8 60 81.7
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 7.5e-19 98.2 118 54.2
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 8.3e-18 94.7 95 52.6
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 4.1e-17 92.4 177 37.3
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 7.8e-16 88.2 115 45.2
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.3e-15 86.7 71 57.7
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 3.6e-13 79.3 70 57.1
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 2.3e-12 76.6 69 53.6
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 6.8e-12 75.1 74 54.1
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.7e-07 60.5 76 44.7
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-07 58.9 94 36.2
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 8.6e-07 58.2 43 65.1
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 8.6e-07 58.2 43 65.1
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 7.3e-06 55.1 176 30.7
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 9.5e-06 54.7 93 44.1


User provided reference genes

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