Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 7.7e-139 497.3 276 100.0
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 8.6e-106 387.5 279 82.4
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 8.6e-106 387.5 279 82.4
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 7.3e-105 384.4 281 80.1
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 1.4e-103 380.2 281 81.9
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 1.8e-103 379.8 281 80.1
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 1.9e-89 333.2 287 72.5
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 1.2e-88 330.5 287 71.8
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 1.2e-88 330.5 288 71.9
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.6e-83 313.5 281 70.8
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.3e-74 283.9 292 66.4
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 5.1e-74 282.0 287 66.2
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 6.6e-74 281.6 284 62.3
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 9.6e-73 277.7 289 65.4
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 2.8e-72 276.2 211 74.9
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.4e-71 273.9 297 63.6
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 1.3e-61 240.7 295 53.2
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 8.4e-53 211.5 210 63.3
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 1.4e-52 210.7 210 63.8
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 1.6e-48 197.2 305 46.2
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 3.1e-47 193.0 309 49.8
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.2e-45 186.8 322 44.4
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 6.7e-42 175.3 306 45.4
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 1.5e-41 174.1 203 56.2
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.8e-39 167.2 241 52.3
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 5.9e-38 162.2 321 41.7
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 9.4e-36 154.8 124 71.0
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 9.4e-36 154.8 173 57.8
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 3.6e-35 152.9 324 41.0
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 1.1e-33 147.9 111 77.5
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 1.7e-32 144.1 303 43.6
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 8.2e-32 141.7 301 44.2
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 2.4e-31 140.2 301 43.2
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 2.6e-30 136.7 300 42.0
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 4.5e-30 136.0 301 42.9
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 7.7e-30 135.2 301 43.2
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 2.6e-25 120.2 281 38.4
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 7.4e-25 118.6 268 38.4
BraA08t33657Z Brassica rapa HOM05D008819 ORTHO05D003197 7.7e-22 108.6 111 63.1
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 4.5e-14 82.8 303 33.7
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.5e-13 78.6 290 34.8
CARHR020590 Cardamine hirsuta HOM05D008819 ORTHO05D003197 2.5e-12 77.0 89 71.9
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 1.6e-11 74.3 300 33.7
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.7e-11 72.8 292 31.5
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.1e-11 72.4 290 33.8
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 6.8e-10 68.9 310 31.0
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.4e-09 66.6 287 33.8
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.5e-09 65.5 295 32.9
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.8e-09 65.1 217 30.4
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 8.3e-08 62.0 319 28.8
AL2G36300 Arabidopsis lyrata HOM05D014797 ORTHO05D016596 3.1e-07 60.1 252 29.8
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 5.4e-07 59.3 236 28.8
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 9.1e-07 58.5 304 29.9
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 1.6e-06 57.8 238 29.4
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.5e-06 56.6 233 29.6
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 7.7e-06 55.5 257 29.6


User provided reference genes

Program Settings