Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32014 Brassica carinata HOM05D001206 ORTHO05D005935 9.1e-85 317.0 177 100.0
BcaB07g32016 Brassica carinata HOM05D001206 ORTHO05D005935 9.1e-85 317.0 177 100.0
C05p18490 Brassica napus HOM05D001206 ORTHO05D005935 2.2e-70 269.2 138 99.3
BcaC03g15127 Brassica carinata HOM05D001206 ORTHO05D005935 1.1e-58 230.3 133 91.7
BcaC04g22258 Brassica carinata HOM05D001206 ORTHO05D005935 7.6e-47 191.0 108 90.7
BcaC05g25894 Brassica carinata HOM05D001206 ORTHO05D005935 1.7e-43 179.9 90 100.0
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 4.8e-41 171.8 266 43.2
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 8.1e-41 171.0 266 42.9
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 8.1e-41 171.0 266 42.9
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 5.3e-40 168.3 266 42.9
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 9.0e-40 167.5 266 42.1
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 9.0e-40 167.5 266 42.1
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 2.0e-39 166.4 266 41.7
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 2.6e-39 166.0 266 42.1
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 1.7e-38 163.3 266 41.0
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 8.4e-38 161.0 265 41.5
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 1.1e-37 160.6 266 41.0
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 5.4e-37 158.3 266 40.6
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 2.7e-36 156.0 266 40.6
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 1.7e-35 153.3 265 40.8
BcaB06g27855 Brassica carinata HOM05D001206 ORTHO05D005935 1.6e-33 146.7 126 66.7
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 4.0e-32 142.1 266 36.5
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 4.2e-29 132.1 260 36.5
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 1.9e-26 123.2 264 33.0
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 1.3e-25 120.6 262 33.6
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 1.6e-25 120.2 260 33.8
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 1.6e-25 120.2 267 33.3
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 2.8e-25 119.4 262 32.4
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 2.8e-25 119.4 261 33.0
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 3.7e-25 119.0 262 32.8
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 6.2e-25 118.2 261 33.7
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 6.2e-25 118.2 264 32.2
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 6.2e-25 118.2 264 32.2
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 6.2e-25 118.2 260 31.9
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 1.1e-24 117.5 262 32.1
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 1.1e-24 117.5 262 33.6
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 1.1e-24 117.5 264 31.4
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 3.1e-24 115.9 264 31.8
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 4.0e-24 115.5 262 32.4
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 5.3e-24 115.2 261 33.3
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 6.9e-24 114.8 262 31.7
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 9.0e-24 114.4 262 32.4
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 1.2e-23 114.0 262 30.5
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 1.5e-23 113.6 260 31.9
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.5e-23 113.6 262 32.1
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 1.5e-23 113.6 260 31.5
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 1.5e-23 113.6 262 32.4
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 1.5e-23 113.6 260 31.2
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 2.0e-23 113.2 260 32.7
CAN.G1191.9 Capsicum annuum HOM05D001206 ORTHO05D005935 2.0e-23 113.2 260 31.2
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 2.0e-23 113.2 262 31.7
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 2.0e-23 113.2 262 31.3
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 2.0e-23 113.2 260 31.2
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 2.0e-23 113.2 264 31.4
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 2.6e-23 112.8 267 33.3
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 3.4e-23 112.5 260 32.7
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 4.5e-23 112.1 263 31.2
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 5.8e-23 111.7 260 31.5
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 5.8e-23 111.7 260 31.9
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 7.6e-23 111.3 259 32.8
Cc05_g09120 Coffea canephora HOM05D001206 ORTHO05D005935 1.0e-22 110.9 260 31.5
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 1.3e-22 110.5 262 31.7
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 1.3e-22 110.5 260 31.5
BolC3t19603H Brassica oleracea HOM05D000152 ORTHO05D000609 1.7e-22 110.2 66 84.8
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 1.7e-22 110.2 260 31.2
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 2.2e-22 109.8 269 30.9
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 2.2e-22 109.8 266 31.2
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 2.9e-22 109.4 262 31.3
VMungo0540G0597 Vigna mungo HOM05D001206 ORTHO05D005935 2.9e-22 109.4 260 31.2
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 3.8e-22 109.0 272 30.5
BcaC01g01682 Brassica carinata HOM05D007004 ORTHO05D009040 4.9e-22 108.6 66 83.3
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 8.4e-22 107.8 260 30.4
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 1.1e-21 107.5 260 31.9
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 1.1e-21 107.5 260 30.8
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 1.4e-21 107.1 260 30.8
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 1.9e-21 106.7 260 30.4
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 4.2e-21 105.5 255 31.4
Nitab4.5_0002027g0090 Nicotiana tabacum HOM05D001206 ORTHO05D005935 4.2e-21 105.5 277 29.6
TPR.G13547 Trifolium pratense HOM05D001206 ORTHO05D005935 4.2e-21 105.5 260 31.2
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 1.2e-20 104.0 284 29.2
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 1.6e-20 103.6 260 30.0
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 1.6e-20 103.6 269 30.5
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 1.6e-20 103.6 258 31.0
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 2.1e-20 103.2 260 30.0
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 2.1e-20 103.2 260 29.2
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 2.7e-20 102.8 262 29.8
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 4.6e-20 102.1 284 28.9
Haze_13465 Corylus avellana HOM05D001206 ORTHO05D005935 7.9e-20 101.3 65 76.9
BcaB07g30259 Brassica carinata HOM05D001206 ORTHO05D005935 1.8e-19 100.1 164 41.5
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 3.3e-18 95.9 259 28.6
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 7.4e-18 94.7 258 28.3
Gorai.N005800 Gossypium raimondii HOM05D001206 ORTHO05D005935 7.4e-18 94.7 107 53.3
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 9.6e-18 94.4 60 78.3
HPP92_002350 Vanilla planifolia HOM05D001206 ORTHO05D005935 1.6e-17 93.6 251 29.1
Actinidia11180 Actinidia chinensis HOM05D001206 ORTHO05D005935 2.1e-17 93.2 61 73.8
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 1.1e-16 90.9 258 26.4
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 6.9e-16 88.2 262 29.0
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 6.9e-16 88.2 65 69.2
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 9.0e-16 87.8 260 27.3
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 3.4e-15 85.9 65 66.2
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 5.8e-15 85.1 267 27.7
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 7.6e-15 84.7 256 28.1
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 1.0e-14 84.3 240 29.6
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 1.0e-14 84.3 237 29.1
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 2.2e-14 83.2 54 72.2
Haze_13462 Corylus avellana HOM05D001206 ORTHO05D005935 6.5e-14 81.6 81 53.1
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 8.4e-14 81.3 81 53.1
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 1.9e-13 80.1 238 28.2
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 1.9e-13 80.1 260 25.8
Dinv06275 Davidia involucrata HOM05D001206 ORTHO05D005935 9.3e-13 77.8 81 51.9
Glyma.18G104200 Glycine max HOM05D001206 ORTHO05D005935 1.6e-12 77.0 81 50.6
Os04g0643200 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D005935 1.6e-12 77.0 81 51.9
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 1.6e-12 77.0 239 26.8
PGSC0003DMG401021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 1.6e-12 77.0 81 50.6
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 3.5e-12 75.9 51 70.6
Sed0006625 Sechium edule HOM05D001206 ORTHO05D005935 3.5e-12 75.9 80 51.2
FvH4_6g37630 Fragaria vesca HOM05D001206 ORTHO05D005935 6.1e-12 75.1 81 50.6
Lj1A587G24 Lonicera japonica HOM05D001206 ORTHO05D005935 7.9e-12 74.7 241 28.2
Zm00001eb068770 Zea mays HOM05D001206 ORTHO05D005935 2.3e-11 73.2 81 53.1
MBI15_g31580_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 3.9e-11 72.4 41 82.9
HPP92_002388 Vanilla planifolia HOM05D001206 ORTHO05D005935 1.9e-10 70.1 75 46.7
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.3e-09 65.1 39 76.9
TPR.G20838 Trifolium pratense HOM05D001206 ORTHO05D005935 6.3e-09 65.1 72 50.0
Nitab4.5_0001402g0110 Nicotiana tabacum HOM05D001206 ORTHO05D005935 1.4e-08 63.9 38 76.3
Nitab4.5_0001402g0160 Nicotiana tabacum HOM05D001206 ORTHO05D005935 1.4e-08 63.9 38 76.3
Sc21g0004390 Simmondsia chinensis HOM05D001206 ORTHO05D005935 1.4e-08 63.9 85 43.5
Cre10.g439400 Chlamydomonas reinhardtii HOM05D001206 ORTHO05D005935 3.1e-08 62.8 57 56.1
Pp3s32_288 Physcomitrium patens HOM05D001206 ORTHO05D005935 3.1e-08 62.8 51 56.9
HanXRQChr04g0113591 Helianthus annuus HOM05D001206 ORTHO05D015096 9.0e-08 61.2 38 73.7
PGSC0003DMG402021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 9.0e-08 61.2 39 74.4
MBI04_g41030_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 3.4e-07 59.3 34 79.4
SMO118G0181 Selaginella moellendorffii HOM05D001206 ORTHO05D005935 4.5e-07 58.9 41 68.3
Gorai.010G208200 Gossypium raimondii HOM05D001206 ORTHO05D005935 1.7e-06 57.0 39 74.4
PRCOL_00000262 Prasinoderma coloniale HOM05D001206 ORTHO05D005935 2.2e-06 56.6 63 47.6
MCO01G356 Micromonas commoda HOM05D001206 ORTHO05D005935 5.0e-06 55.5 49 55.1


User provided reference genes

Program Settings