Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32007 Brassica carinata HOM05D004523 ORTHO05D006021 3.2e-74 281.6 133 100.0
BcaB07g32006 Brassica carinata HOM05D004523 ORTHO05D006021 3.6e-49 198.4 133 74.4
BcaB03g14429 Brassica carinata HOM05D004523 ORTHO05D006021 7.9e-49 197.2 133 74.4
C07p23650 Brassica napus HOM05D004523 ORTHO05D006021 7.9e-49 197.2 133 74.4
BolC7t42897H Brassica oleracea HOM05D004523 ORTHO05D006021 7.9e-49 197.2 133 74.4
AL1G32610 Arabidopsis lyrata HOM05D004523 ORTHO05D006021 1.4e-48 196.4 133 73.7
A07p16200 Brassica napus HOM05D004523 ORTHO05D006021 5.1e-48 194.5 133 73.7
BraA07t29346Z Brassica rapa HOM05D004523 ORTHO05D006021 5.1e-48 194.5 133 73.7
Thhalv10007331m.g Eutrema salsugineum HOM05D004523 ORTHO05D006021 5.1e-48 194.5 133 72.9
Carub.0001s1940 Capsella rubella HOM05D004523 ORTHO05D006021 8.8e-48 193.7 133 72.2
CARHR020380 Cardamine hirsuta HOM05D004523 ORTHO05D006021 8.8e-48 193.7 133 72.2
AT1G19880 Arabidopsis thaliana HOM05D004523 ORTHO05D006021 1.5e-47 193.0 133 71.4
Sp1g17680 Schrenkiella parvula HOM05D004523 ORTHO05D006021 2.0e-47 192.6 133 72.2
Aa31LG7G4380 Aethionema arabicum HOM05D004523 ORTHO05D006021 1.3e-46 189.9 117 79.5
BcaB03g14360 Brassica carinata HOM05D004523 ORTHO05D006021 1.3e-46 189.9 129 73.6
CiPaw.07G152800 Carya illinoinensis HOM05D004523 ORTHO05D006021 1.3e-46 189.9 133 69.2
Cc10_g01960 Coffea canephora HOM05D004523 ORTHO05D006021 3.7e-46 188.3 133 69.2
Gohir.A06G005700 Gossypium hirsutum HOM05D004523 ORTHO05D006021 3.7e-46 188.3 133 68.4
Gorai.010G005900 Gossypium raimondii HOM05D004523 ORTHO05D006021 3.7e-46 188.3 133 68.4
Cfa013919 Carpinus fangiana HOM05D004523 ORTHO05D006021 6.3e-46 187.6 133 68.4
THA.LOC104809379 Tarenaya hassleriana HOM05D004523 ORTHO05D006021 6.3e-46 187.6 133 69.2
COL.COLO4_26176 Corchorus olitorius HOM05D004523 ORTHO05D006021 8.2e-46 187.2 133 68.4
Cpa.g.sc26.20 Carica papaya HOM05D004523 ORTHO05D006021 1.4e-45 186.4 133 68.4
Gohir.D06G001500 Gossypium hirsutum HOM05D004523 ORTHO05D006021 1.4e-45 186.4 132 68.2
Nitab4.5_0005185g0050 Nicotiana tabacum HOM05D004523 ORTHO05D006021 1.4e-45 186.4 134 69.4
BcaB03g14359 Brassica carinata HOM05D004523 ORTHO05D006021 1.8e-45 186.0 133 72.2
MD15G1014900 Malus domestica HOM05D004523 ORTHO05D006021 1.8e-45 186.0 133 68.4
Oeu007351.3 Olea europaea HOM05D004523 ORTHO05D006021 1.8e-45 186.0 133 68.4
Actinidia15399 Actinidia chinensis HOM05D004523 ORTHO05D006021 3.1e-45 185.3 133 67.7
Rhsim06G0025000 Rhododendron simsii HOM05D004523 ORTHO05D006021 3.1e-45 185.3 133 67.7
RhsimUnG0148000 Rhododendron simsii HOM05D004523 ORTHO05D006021 3.1e-45 185.3 133 67.7
Thecc.08G039300 Theobroma cacao HOM05D004523 ORTHO05D006021 3.1e-45 185.3 133 68.4
Dinv31821 Davidia involucrata HOM05D004523 ORTHO05D006021 5.3e-45 184.5 133 66.9
Duzib093G2179 Durio zibethinus HOM05D004523 ORTHO05D006021 5.3e-45 184.5 133 66.9
arahy.Tifrunner.gnm1.ann1.22W300 Arachis hypogaea HOM05D004523 ORTHO05D006021 7.0e-45 184.1 133 66.9
arahy.Tifrunner.gnm1.ann1.F7HX5D Arachis hypogaea HOM05D004523 ORTHO05D006021 7.0e-45 184.1 133 66.9
Haze_22594 Corylus avellana HOM05D004523 ORTHO05D006021 7.0e-45 184.1 131 67.9
Dinv39495 Davidia involucrata HOM05D004523 ORTHO05D006021 7.0e-45 184.1 133 66.9
RcHm_v2.0_Chr6g0302441 Rosa chinensis HOM05D004523 ORTHO05D006021 7.0e-45 184.1 133 66.9
CSS0014696 Camellia sinensis var. sinensis HOM05D004523 ORTHO05D006021 9.1e-45 183.7 133 66.9
CsaV3_3G045630 Cucumis sativus L. HOM05D004523 ORTHO05D006021 9.1e-45 183.7 133 67.7
Gohir.D05G259000 Gossypium hirsutum HOM05D004523 ORTHO05D006021 9.1e-45 183.7 133 66.9
PGR031G3749 Punica granatum HOM05D004523 ORTHO05D006021 9.1e-45 183.7 133 66.9
QL02p010964 Quercus lobata HOM05D004523 ORTHO05D006021 9.1e-45 183.7 139 66.2
Atru.chr13.334 Acer truncatum HOM05D004523 ORTHO05D006021 1.2e-44 183.3 133 66.9
MELO3C003774.2 Cucumis melo HOM05D004523 ORTHO05D006021 1.2e-44 183.3 133 67.7
Gorai.009G270600 Gossypium raimondii HOM05D004523 ORTHO05D006021 1.5e-44 183.0 133 66.2
MD08G1015900 Malus domestica HOM05D004523 ORTHO05D006021 2.0e-44 182.6 133 66.2
Sed0001890 Sechium edule HOM05D004523 ORTHO05D006021 2.6e-44 182.2 133 66.2
MSTRG.1214 Avicennia marina HOM05D004523 ORTHO05D006021 3.5e-44 181.8 133 68.4
DCAR_022439 Daucus carota HOM05D004523 ORTHO05D006021 3.5e-44 181.8 127 70.1
FvH4_2g38830 Fragaria vesca HOM05D004523 ORTHO05D006021 3.5e-44 181.8 133 66.9
Manes.18G016300 Manihot esculenta HOM05D004523 ORTHO05D006021 3.5e-44 181.8 133 66.2
Nn6g32283 Nelumbo nucifera HOM05D004523 ORTHO05D006021 3.5e-44 181.8 133 68.4
TWI56G1290 Tripterygium wilfordii HOM05D004523 ORTHO05D006021 3.5e-44 181.8 133 65.4
Lj1g0008508 Lotus japonicus HOM05D004523 ORTHO05D006021 5.9e-44 181.0 133 66.9
Potri.005G236000 Populus trichocarpa HOM05D004523 ORTHO05D006021 5.9e-44 181.0 133 66.2
vmacro21709 Vaccinium macrocarpon HOM05D004523 ORTHO05D006021 5.9e-44 181.0 147 61.9
Migut.C00821 Erythranthe guttata HOM05D004523 ORTHO05D006021 7.7e-44 180.6 133 68.4
Manes.05G151200 Manihot esculenta HOM05D004523 ORTHO05D006021 7.7e-44 180.6 133 66.2
Potri.002G026600 Populus trichocarpa HOM05D004523 ORTHO05D006021 7.7e-44 180.6 133 64.7
Prupe.1G369200 Prunus persica HOM05D004523 ORTHO05D006021 7.7e-44 180.6 133 66.2
SGA_v2.0_scaffold11G05887 Striga asiatica HOM05D004523 ORTHO05D006021 7.7e-44 180.6 118 75.4
Eucgr.F02093 Eucalyptus grandis HOM05D004523 ORTHO05D006021 1.0e-43 180.3 133 66.2
FAN20G1124 Fragaria x ananassa HOM05D004523 ORTHO05D006021 1.0e-43 180.3 133 66.2
Gohir.A05G257600 Gossypium hirsutum HOM05D004523 ORTHO05D006021 1.0e-43 180.3 133 64.7
Medtr3g113250 Medicago truncatula HOM05D004523 ORTHO05D006021 1.3e-43 179.9 133 67.7
Sabra05G0182400 Salix brachista HOM05D004523 ORTHO05D006021 1.3e-43 179.9 133 66.2
TPR.G30285 Trifolium pratense HOM05D004523 ORTHO05D006021 1.3e-43 179.9 134 67.2
CSS0004717 Camellia sinensis var. sinensis HOM05D004523 ORTHO05D006021 1.7e-43 179.5 133 66.2
Nn5g29261 Nelumbo nucifera HOM05D004523 ORTHO05D006021 1.7e-43 179.5 133 66.9
SalBow7G1964 Salvia bowleyana HOM05D004523 ORTHO05D006021 1.7e-43 179.5 133 66.9
MSTRG.25223 Avicennia marina HOM05D004523 ORTHO05D006021 2.2e-43 179.1 133 67.7
EL10Ac1g00454 Beta vulgaris HOM05D004523 ORTHO05D006021 2.2e-43 179.1 134 64.9
Ca_02055_v3 Cicer arietinum L. HOM05D004523 ORTHO05D006021 2.9e-43 178.7 133 66.9
ClCG05G018540 Citrullus lanatus HOM05D004523 ORTHO05D006021 2.9e-43 178.7 133 65.4
Ciclev10000798m.g Citrus clementina HOM05D004523 ORTHO05D006021 3.8e-43 178.3 132 66.7
Lalb_Chr08g0246121 Lupinus albus HOM05D004523 ORTHO05D006021 3.8e-43 178.3 133 66.9
FAN15G3344 Fragaria x ananassa HOM05D004523 ORTHO05D006021 5.0e-43 177.9 133 66.2
Lalb_Chr11g0062021 Lupinus albus HOM05D004523 ORTHO05D006021 5.0e-43 177.9 133 66.9
Glyma.06G025900 Glycine max HOM05D004523 ORTHO05D006021 6.5e-43 177.6 133 64.7
Sed0024533 Sechium edule HOM05D004523 ORTHO05D006021 6.5e-43 177.6 133 65.4
FAN27G1233 Fragaria x ananassa HOM05D004523 ORTHO05D006021 8.5e-43 177.2 130 66.9
Glyma.04G026100 Glycine max HOM05D004523 ORTHO05D006021 8.5e-43 177.2 133 65.4
unitig_32.g11145 Utricularia gibba HOM05D004523 ORTHO05D006021 8.5e-43 177.2 133 65.4
CANSAT80G1473 Cannabis sativa HOM05D004523 ORTHO05D006021 1.1e-42 176.8 133 65.4
Os04g0662800 Oryza sativa ssp. japonica HOM05D004523 ORTHO05D006021 1.1e-42 176.8 133 63.9
Sabra02G0020700 Salix brachista HOM05D004523 ORTHO05D006021 1.1e-42 176.8 133 63.9
Hma1.2p1_1339F.1_g276600 Hydrangea macrophylla HOM05D004523 ORTHO05D006021 1.4e-42 176.4 139 61.9
ATR0147G022 Amborella trichopoda HOM05D004523 ORTHO05D006021 1.9e-42 176.0 133 66.9
Aqoxy6G02327 Aquilegia oxysepala HOM05D004523 ORTHO05D006021 1.9e-42 176.0 133 64.7
Psat5g014360 Pisum sativum HOM05D004523 ORTHO05D006021 1.9e-42 176.0 133 66.9
SGA_v2.0_scaffold92G28268 Striga asiatica HOM05D004523 ORTHO05D006021 1.9e-42 176.0 116 75.0
BraA06t24714Z Brassica rapa HOM05D004523 ORTHO05D006021 2.5e-42 175.6 131 71.0
CANSAT25G1932 Cannabis sativa HOM05D004523 ORTHO05D006021 3.2e-42 175.3 133 65.4
Sc02g0004880 Simmondsia chinensis HOM05D004523 ORTHO05D006021 3.2e-42 175.3 133 64.7
VMungo1309G0339 Vigna mungo HOM05D004523 ORTHO05D006021 3.2e-42 175.3 133 63.9
Zm00001eb432950 Zea mays HOM05D004523 ORTHO05D006021 3.2e-42 175.3 132 64.4
Lj4A28G65 Lonicera japonica HOM05D004523 ORTHO05D006021 5.5e-42 174.5 133 63.2
Phvul.009G015100 Phaseolus vulgaris HOM05D004523 ORTHO05D006021 1.2e-41 173.3 133 63.2
GSVIVG01009847001 Vitis vinifera HOM05D004523 ORTHO05D006021 1.2e-41 173.3 133 63.9
TAR625G0232 Trochodendron aralioides HOM05D004523 ORTHO05D006021 1.6e-41 172.9 133 65.4
CAN.G1271.10 Capsicum annuum HOM05D004523 ORTHO05D006021 2.1e-41 172.6 133 64.7
PGSC0003DMG400003721 Solanum tuberosum HOM05D004523 ORTHO05D006021 2.1e-41 172.6 133 63.9
Hund17232 Selenicereus undatus HOM05D004523 ORTHO05D006021 2.7e-41 172.2 133 63.9
SEGI_37381 Sequoiadendron giganteum HOM05D004523 ORTHO05D006021 2.7e-41 172.2 131 64.9
TAR376G0074 Trochodendron aralioides HOM05D004523 ORTHO05D006021 2.7e-41 172.2 133 64.7
vmacro04335 Vaccinium macrocarpon HOM05D004523 ORTHO05D006021 3.6e-41 171.8 117 69.2
AUR62014404 Chenopodium quinoa HOM05D004523 ORTHO05D006021 4.7e-41 171.4 117 70.1
AUR62019141 Chenopodium quinoa HOM05D004523 ORTHO05D006021 4.7e-41 171.4 133 63.2
Oeu024517.1 Olea europaea HOM05D004523 ORTHO05D006021 4.7e-41 171.4 117 69.2
Solyc04g081200.3 Solanum lycopersicum HOM05D004523 ORTHO05D006021 6.1e-41 171.0 133 63.9
Sopen04g034810 Solanum pennellii HOM05D004523 ORTHO05D006021 8.0e-41 170.6 133 63.9
ECA247G3421 Erigeron canadensis HOM05D004523 ORTHO05D006021 2.3e-40 169.1 133 62.4
PSO675G7270 Papaver somniferum HOM05D004523 ORTHO05D006021 3.0e-40 168.7 133 61.7
HanXRQChr02g0044011 Helianthus annuus HOM05D004523 ORTHO05D006021 3.9e-40 168.3 133 61.7
HanXRQChr04g0106361 Helianthus annuus HOM05D004523 ORTHO05D006021 3.9e-40 168.3 133 63.9
BcaC05g25883 Brassica carinata HOM05D004523 ORTHO05D006021 5.2e-40 167.9 127 66.9
Lsat_1_v5_gn_1_16121 Lactuca sativa HOM05D004523 ORTHO05D006021 6.7e-40 167.5 128 62.5
C05p18390 Brassica napus HOM05D004523 ORTHO05D006021 1.1e-39 166.8 127 67.7
Lsat_1_v5_gn_4_114800 Lactuca sativa HOM05D004523 ORTHO05D006021 2.6e-39 165.6 127 63.0
CDE09G0069 Ceratophyllum demersum HOM05D004523 ORTHO05D006021 3.3e-39 165.2 133 61.7
Oeu007048.1 Olea europaea HOM05D004523 ORTHO05D006021 1.3e-38 163.3 128 63.3
HPP92_024533 Vanilla planifolia HOM05D004523 ORTHO05D006021 1.7e-38 162.9 133 60.9
Mapoly0046s0091 Marchantia polymorpha HOM05D004523 ORTHO05D006021 1.4e-37 159.8 131 61.8
SMO164G0139 Selaginella moellendorffii HOM05D004523 ORTHO05D006021 3.1e-37 158.7 131 60.3
A06p16090 Brassica napus HOM05D004523 ORTHO05D006021 9.1e-37 157.1 114 72.8
PSO478G0253 Papaver somniferum HOM05D004523 ORTHO05D006021 7.7e-36 154.1 133 59.4
PSO782G5581 Papaver somniferum HOM05D004523 ORTHO05D006021 1.7e-35 152.9 133 59.4
Rhsim07G0245600 Rhododendron simsii HOM05D004523 ORTHO05D006021 5.0e-35 151.4 156 51.9
ECA232G3022 Erigeron canadensis HOM05D004523 ORTHO05D006021 8.5e-35 150.6 123 61.0
PSO478G2324 Papaver somniferum HOM05D004523 ORTHO05D006021 1.9e-34 149.4 117 65.0
PSO782G4507 Papaver somniferum HOM05D004523 ORTHO05D006021 5.5e-34 147.9 117 64.1
Pp3c23_7830 Physcomitrium patens HOM05D004523 ORTHO05D006021 7.2e-34 147.5 131 57.3
CBR_g15958 Chara braunii HOM05D004523 ORTHO05D006021 1.7e-30 136.3 131 53.4
Peaxi162Scf00287g01630 Petunia axillaris HOM05D004523 ORTHO05D006021 1.4e-29 133.3 156 46.8
MCO09G275 Micromonas commoda HOM05D004523 ORTHO05D006021 8.8e-24 114.0 117 51.3
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 8.6e-19 97.4 128 44.5
SHI08088 Sapria himalayana HOM05D000624 ORTHO05D006021 4.0e-16 88.6 124 41.1
Cre17.g742200 Chlamydomonas reinhardtii HOM05D004523 ORTHO05D006021 1.5e-15 86.7 121 35.5
HanXRQChr12g0357661 Helianthus annuus HOM05D004523 ORTHO05D006021 5.0e-11 71.6 62 58.1
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 4.3e-10 68.6 53 64.2
vmacro07573 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 4.3e-10 68.6 64 53.1
HanXRQChr03g0075571 Helianthus annuus HOM05D004523 ORTHO05D006021 9.8e-07 57.4 41 63.4
HanXRQChr04g0105481 Helianthus annuus HOM05D004523 ORTHO05D006021 9.8e-07 57.4 41 63.4


User provided reference genes

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