Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 7.7e-169 597.0 297 100.0
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 2.5e-159 565.5 297 93.6
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 1.6e-158 562.8 297 93.6
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 6.1e-158 560.8 297 92.6
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 1.4e-157 559.7 298 93.0
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 1.6e-150 536.2 297 87.5
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 2.3e-144 515.8 297 84.5
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 1.4e-141 506.5 300 83.0
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 8.9e-141 503.8 299 81.6
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 9.8e-140 500.4 299 81.9
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 2.5e-135 485.7 277 85.2
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 2.1e-126 456.1 300 73.7
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 8.9e-125 450.7 300 73.3
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 1.0e-104 384.0 300 61.0
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 2.8e-102 375.9 296 61.8
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 3.6e-102 375.6 295 61.7
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 6.2e-102 374.8 298 62.1
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 1.4e-101 373.6 296 62.2
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.8e-101 373.2 294 61.2
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 2.4e-101 372.9 298 61.4
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 2.4e-101 372.9 297 61.3
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 5.3e-101 371.7 299 60.9
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 6.9e-101 371.3 299 60.5
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 1.2e-100 370.5 304 59.5
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.2e-100 370.5 300 59.7
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 2.2e-99 366.3 307 59.6
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 3.8e-99 365.5 301 61.1
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 8.4e-99 364.4 304 58.9
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 1.1e-98 364.0 300 59.0
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 1.4e-98 363.6 295 60.0
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 1.9e-98 363.2 307 58.6
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 3.2e-98 362.5 290 62.1
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 5.4e-98 361.7 300 61.0
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 9.3e-98 360.9 298 61.1
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 9.3e-98 360.9 295 61.0
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 1.2e-97 360.5 300 61.3
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 2.7e-97 359.4 300 59.0
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.3e-96 357.1 299 58.5
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 3.9e-96 355.5 301 58.1
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 5.1e-96 355.1 297 56.9
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 6.6e-96 354.8 296 59.1
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 4.3e-95 352.1 310 58.1
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 4.3e-95 352.1 294 57.5
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 9.6e-95 350.9 295 59.0
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 1.6e-94 350.1 303 57.8
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.6e-94 350.1 301 57.1
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 6.2e-94 348.2 299 55.5
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 8.1e-94 347.8 297 57.9
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.1e-93 347.4 294 56.8
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 3.1e-93 345.9 300 55.0
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 6.9e-93 344.7 298 57.0
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 1.2e-92 344.0 301 57.5
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 1.5e-92 343.6 302 57.0
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 5.8e-92 341.7 299 55.2
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 5.8e-92 341.7 308 56.2
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 7.6e-92 341.3 299 54.5
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.3e-91 340.5 302 55.6
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.3e-91 340.5 302 55.6
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.7e-91 340.1 299 55.2
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 2.2e-91 339.7 294 58.5
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 2.9e-91 339.3 302 56.3
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 6.4e-91 338.2 297 55.9
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 6.4e-91 338.2 297 54.5
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 1.1e-90 337.4 276 62.0
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.1e-90 337.4 302 55.6
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 1.4e-90 337.0 299 57.2
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 2.7e-89 332.8 304 56.6
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 2.3e-88 329.7 309 51.8
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 3.9e-88 328.9 313 52.1
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 3.9e-88 328.9 298 58.7
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 2.5e-87 326.2 298 55.0
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 4.3e-87 325.5 275 57.5
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 9.6e-87 324.3 341 51.3
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 2.1e-86 323.2 304 54.9
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 1.4e-85 320.5 280 57.9
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.1e-85 319.3 299 54.2
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 5.3e-85 318.5 287 55.7
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 6.9e-85 318.2 282 56.7
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 2.6e-84 316.2 289 54.3
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.2e-83 313.2 238 62.2
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.9e-83 312.0 282 55.7
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 4.9e-83 312.0 238 61.8
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 8.4e-83 311.2 298 52.3
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 2.5e-82 309.7 300 54.0
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 1.2e-81 307.4 244 61.9
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.7e-81 306.2 291 54.0
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 2.7e-81 306.2 247 61.9
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 4.6e-81 305.4 299 52.5
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 6.2e-78 295.0 239 62.3
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 3.1e-77 292.7 381 43.8
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 3.4e-76 289.3 275 53.8
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 8.4e-75 284.6 295 50.8
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 4.2e-74 282.3 276 50.4
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 5.5e-74 282.0 297 46.8
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 1.6e-65 253.8 305 48.2
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 7.4e-63 245.0 282 44.7
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.1e-61 241.1 191 64.9
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 5.3e-61 238.8 302 44.4
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 3.6e-57 226.1 310 41.0
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.1e-55 221.1 304 42.4
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 1.5e-55 220.7 219 51.1
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 1.5e-55 220.7 291 43.3
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 1.0e-48 198.0 279 42.7
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.4e-45 187.6 167 59.3
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 1.1e-42 177.9 242 42.6
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 2.0e-36 157.1 391 31.7
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.4e-29 134.4 214 38.8
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.3e-27 127.9 328 32.6
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 3.3e-26 123.2 107 56.1
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 3.7e-22 109.8 106 49.1
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 2.4e-21 107.1 147 40.8
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.3e-18 96.3 119 42.0
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 6.1e-17 92.4 114 43.0
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 2.4e-13 80.5 64 56.2


User provided reference genes

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