Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 0.0e+00 1148.7 591 100.0
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 4.0e-312 1073.5 607 92.8
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 2.8e-311 1071.2 607 92.4
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 6.2e-303 1043.5 607 90.4
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 5.1e-281 970.7 621 83.6
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 3.3e-280 968.0 614 84.5
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 3.6e-279 964.5 614 84.2
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 3.9e-273 944.5 612 84.0
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.4e-267 926.0 623 81.1
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.0e-249 866.7 539 84.6
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.3e-241 839.0 632 71.8
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 7.0e-230 800.8 633 69.5
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 3.7e-223 778.5 638 67.6
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 3.7e-223 778.5 637 68.1
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.0e-217 760.4 636 67.8
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 8.8e-217 757.3 630 66.3
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.5e-216 754.2 631 66.7
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 2.5e-203 712.6 621 64.6
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.4e-201 706.8 672 61.0
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 8.9e-201 704.1 618 63.8
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 2.6e-200 702.6 617 64.5
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 3.4e-200 702.2 618 63.6
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 3.4e-200 702.2 623 62.6
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 9.8e-200 700.7 622 62.5
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.8e-194 682.6 597 64.7
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 4.0e-193 678.7 664 58.1
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.2e-182 642.5 650 55.1
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 6.2e-178 628.2 591 58.4
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 2.9e-175 619.4 653 54.1
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.9e-174 616.7 653 53.9
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 2.1e-173 613.2 631 53.4
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 2.7e-173 612.8 597 56.8
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.7e-172 610.1 599 56.9
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 3.0e-172 609.4 624 53.7
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 3.0e-172 609.4 647 53.6
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 3.9e-172 609.0 597 56.8
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.1e-170 603.2 657 52.4
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 2.1e-170 603.2 543 59.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 2.8e-170 602.8 618 54.5
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 3.6e-170 602.4 652 52.8
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 3.6e-170 602.4 673 51.9
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 6.2e-170 601.7 652 53.4
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 6.2e-170 601.7 650 54.0
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.1e-169 600.9 618 55.0
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.8e-169 600.1 541 59.1
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.4e-169 599.7 589 55.7
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 5.3e-169 598.6 654 51.8
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 5.8e-168 595.1 592 56.1
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 5.8e-168 595.1 594 55.2
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 9.9e-168 594.3 589 55.3
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 9.9e-168 594.3 636 53.9
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 2.9e-167 592.8 642 53.0
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 3.8e-167 592.4 652 52.0
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 4.9e-167 592.0 666 51.5
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 8.4e-167 591.3 662 51.4
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 8.4e-167 591.3 662 51.4
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 8.4e-167 591.3 639 54.9
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 1.1e-166 590.9 650 51.8
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 2.4e-166 589.7 671 50.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 4.2e-166 589.0 639 54.5
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 1.2e-165 587.4 657 50.8
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.6e-165 587.0 666 51.7
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 2.1e-165 586.6 664 51.7
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.7e-165 586.3 639 53.1
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 3.5e-165 585.9 566 56.5
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 4.6e-165 585.5 647 52.6
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.0e-164 584.3 673 50.7
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.3e-164 583.2 657 51.1
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 2.3e-164 583.2 675 48.1
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 3.0e-164 582.8 298 97.7
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.9e-164 582.4 513 61.4
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 6.6e-164 581.6 655 51.5
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.1e-163 580.9 603 54.1
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.5e-163 580.5 664 50.6
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.9e-163 580.1 668 51.2
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 3.3e-163 579.3 664 51.5
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 4.0e-161 572.4 599 54.6
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 6.9e-161 571.6 637 51.5
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 6.9e-161 571.6 656 51.4
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 2.6e-160 569.7 360 86.1
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 9.9e-160 567.8 512 59.4
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 4.2e-158 562.4 615 53.0
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 3.3e-155 552.7 589 53.1
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.6e-154 550.4 578 53.3
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 9.0e-153 544.7 645 48.8
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 2.6e-152 543.1 586 51.2
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 3.4e-152 542.7 589 50.9
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 7.6e-152 541.6 601 50.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.1e-150 537.7 509 57.2
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.2e-150 536.2 509 57.0
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 7.1e-150 535.0 656 47.6
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.2e-149 534.3 600 49.2
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.1e-149 533.5 492 57.5
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.3e-148 530.8 649 49.3
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 1.8e-148 530.4 646 48.9
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 8.7e-148 528.1 659 48.9
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.5e-147 526.6 637 49.9
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 1.1e-145 521.2 584 49.3
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 5.3e-145 518.8 670 48.4
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 7.6e-144 515.0 574 51.4
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 2.9e-143 513.1 496 55.0
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 8.4e-143 511.5 512 52.7
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 4.2e-142 509.2 513 52.0
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 9.3e-142 508.1 498 55.0
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 3.7e-138 496.1 641 45.2
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 4.8e-138 495.7 588 49.1
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 4.8e-138 495.7 614 47.4
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.8e-137 493.8 608 46.9
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 5.3e-137 492.3 524 51.3
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 5.3e-137 492.3 558 48.4
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 2.2e-135 486.9 600 48.0
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 5.7e-131 472.2 493 49.7
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 6.3e-130 468.8 552 48.4
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.1e-129 468.0 511 49.1
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.7e-127 460.7 454 54.8
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 7.9e-125 451.8 240 94.2
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.0e-124 449.9 590 45.6
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 1.5e-123 447.6 512 49.8
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 9.7e-123 444.9 613 42.4
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 7.7e-120 435.3 531 45.6
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 1.1e-118 431.4 606 42.2
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 2.9e-111 406.8 633 42.0
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 3.6e-101 373.2 611 38.3
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 3.1e-97 360.1 605 37.4
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 5.2e-84 316.2 625 37.9
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.6e-83 313.9 551 38.7
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 4.4e-83 313.2 220 74.5
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.9e-79 300.1 555 36.4
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 8.6e-79 298.9 466 37.8
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 5.2e-76 289.7 456 36.8
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.7e-74 284.6 402 40.0
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 8.4e-66 255.8 311 49.2
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 3.2e-57 227.3 130 86.2
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.2e-40 172.2 232 44.8
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.7e-13 82.0 316 25.3
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 1.4e-09 68.9 64 56.2
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 1.0e-07 62.8 51 60.8


User provided reference genes

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