Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 5.2e-48 194.1 102 100.0
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 5.2e-48 194.1 102 100.0
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 7.5e-39 163.7 102 83.3
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 9.1e-37 156.8 104 79.8
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 1.6e-36 156.0 104 79.8
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 4.5e-36 154.5 104 80.8
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 1.5e-34 149.4 102 75.5
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.9e-34 149.1 102 74.5
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.7e-30 136.0 108 71.3
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.7e-30 136.0 108 71.3
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 2.2e-30 135.6 105 69.5
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 9.1e-29 130.2 102 66.7
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 2.0e-28 129.0 102 71.6
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 8.6e-27 123.6 111 60.4
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 4.5e-20 101.3 103 55.3
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 8.6e-19 97.1 103 54.4
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 1.2e-17 93.2 103 51.5
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 2.8e-17 92.0 102 51.0
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 3.6e-17 91.7 102 53.9
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 8.0e-17 90.5 103 52.4
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 1.8e-16 89.4 104 51.0
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.8e-16 89.4 105 48.6
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 2.3e-16 89.0 106 49.1
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 4.0e-16 88.2 102 49.0
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 5.2e-16 87.8 103 49.5
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 8.9e-16 87.0 105 52.4
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 1.2e-15 86.7 104 48.1
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.5e-15 86.3 105 47.6
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.5e-15 86.3 105 47.6
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 1.5e-15 86.3 102 50.0
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.0e-15 85.9 104 46.2
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.0e-15 85.9 104 46.2
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 2.0e-15 85.9 106 50.9
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 2.6e-15 85.5 110 50.9
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.6e-15 85.5 101 48.5
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 5.8e-15 84.3 103 48.5
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 9.8e-15 83.6 101 48.5
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 1.3e-14 83.2 103 49.5
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.3e-14 83.2 103 46.6
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.7e-14 82.8 107 49.5
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.2e-14 82.4 104 46.2
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 2.2e-14 82.4 109 46.8
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 3.7e-14 81.6 113 44.2
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 3.7e-14 81.6 106 50.0
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 3.7e-14 81.6 101 47.5
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 4.9e-14 81.3 109 45.0
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 4.9e-14 81.3 105 41.0
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 4.9e-14 81.3 101 47.5
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 6.4e-14 80.9 105 43.8
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 8.3e-14 80.5 102 43.1
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 1.8e-13 79.3 100 44.0
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 3.2e-13 78.6 101 45.5
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 3.2e-13 78.6 109 43.1
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 4.1e-13 78.2 109 44.0
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 4.1e-13 78.2 109 44.0
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 4.1e-13 78.2 103 45.6
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 5.4e-13 77.8 116 48.3
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 9.2e-13 77.0 81 55.6
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.2e-12 76.6 100 42.0
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.6e-12 76.3 106 46.2
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 1.6e-12 76.3 59 64.4
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 2.0e-12 75.9 106 46.2
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 2.7e-12 75.5 112 43.8
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 4.6e-12 74.7 43 74.4
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 4.6e-12 74.7 103 42.7
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.3e-11 73.2 100 44.0
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 2.3e-11 72.4 62 53.2
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 3.0e-11 72.0 103 42.7
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 3.0e-11 72.0 43 69.8
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 3.0e-11 72.0 43 69.8
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 5.0e-11 71.2 104 44.2
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 6.6e-11 70.9 103 45.6
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 6.6e-11 70.9 101 44.6
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 8.6e-11 70.5 103 43.7
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 8.6e-11 70.5 103 44.7
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.1e-10 70.1 89 50.6
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 1.5e-10 69.7 63 54.0
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.9e-10 69.3 61 57.4
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.9e-10 69.3 43 72.1
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 2.5e-10 68.9 74 50.0
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 3.3e-10 68.6 51 62.7
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 3.3e-10 68.6 51 62.7
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 5.6e-10 67.8 81 49.4
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 5.6e-10 67.8 107 38.3
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 9.5e-10 67.0 59 55.9
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 2.1e-09 65.9 44 72.7
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 2.1e-09 65.9 61 57.4
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.3e-08 62.4 53 54.7
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 1.2e-07 60.1 47 59.6
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.0e-07 59.3 52 55.8
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 2.6e-07 58.9 48 58.3
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 3.4e-07 58.5 93 39.8
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 4.4e-07 58.2 41 58.5


User provided reference genes

Program Settings