Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31774 Brassica carinata HOM05D003869 ORTHO05D004718 9.4e-141 503.4 242 100.0
C09p12930 Brassica napus HOM05D003869 ORTHO05D004718 5.0e-110 401.4 224 86.6
BolC9t54184H Brassica oleracea HOM05D003869 ORTHO05D004718 5.0e-110 401.4 224 86.6
BcaC04g23026 Brassica carinata HOM05D003869 ORTHO05D004718 2.5e-109 399.1 224 86.2
A09p10960 Brassica napus HOM05D003869 ORTHO05D004718 1.6e-108 396.4 224 85.7
C09p12940 Brassica napus HOM05D003869 ORTHO05D004718 1.8e-107 392.9 224 85.3
BolC9t54185H Brassica oleracea HOM05D003869 ORTHO05D004718 1.8e-107 392.9 224 85.3
BcaC04g23024 Brassica carinata HOM05D003869 ORTHO05D004718 6.0e-103 377.9 224 82.6
A09p10950 Brassica napus HOM05D003869 ORTHO05D004718 1.7e-102 376.3 224 82.6
BraA09t36735Z Brassica rapa HOM05D003869 ORTHO05D004718 4.6e-95 351.7 296 63.9
AL3G52380 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 1.7e-86 323.2 234 65.8
CARHR053960 Cardamine hirsuta HOM05D003869 ORTHO05D004718 6.9e-83 311.2 233 65.7
C09p12950 Brassica napus HOM05D003869 ORTHO05D004718 1.0e-78 297.4 237 62.9
BolC9t54186H Brassica oleracea HOM05D003869 ORTHO05D004718 1.0e-78 297.4 237 62.9
CARHR053970 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.4e-75 287.0 236 61.0
Sp3g29510 Schrenkiella parvula HOM05D003869 ORTHO05D004718 5.1e-70 268.5 232 57.8
BcaC04g23023 Brassica carinata HOM05D003869 ORTHO05D004718 7.4e-69 264.6 237 57.4
Sp3g29520 Schrenkiella parvula HOM05D003869 ORTHO05D004718 3.1e-67 259.2 234 55.1
BcaB07g31773 Brassica carinata HOM05D003869 ORTHO05D004718 5.8e-66 255.0 232 55.6
Thhalv10023062m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.7e-44 183.7 239 43.9
Carub.0003s3004 Capsella rubella HOM05D003869 ORTHO05D004718 1.9e-40 170.2 256 41.0
Carub.0003s3002 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-37 160.6 251 39.4
Carub.0003s3003 Capsella rubella HOM05D003869 ORTHO05D004718 3.3e-37 159.5 252 41.7
Carub.0003s2999 Capsella rubella HOM05D003869 ORTHO05D004718 9.7e-37 157.9 255 39.6
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 3.1e-35 152.9 252 38.5
CARHR106540 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.2e-34 151.0 238 41.6
AT2G16290 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 3.5e-34 149.4 244 39.3
Carub.0131s0001 Capsella rubella HOM05D003869 ORTHO05D004718 4.5e-34 149.1 251 37.8
Carub.0003s3034 Capsella rubella HOM05D003869 ORTHO05D004718 1.0e-33 147.9 267 37.8
AT2G16300 Arabidopsis thaliana HOM05D003869 ORTHO05D004718 1.8e-30 137.1 227 39.6
BolC9t54187H Brassica oleracea HOM05D003869 ORTHO05D004718 3.3e-29 132.9 107 58.9
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 5.3e-27 125.6 207 40.6
Carub.0131s0002 Capsella rubella HOM05D003869 ORTHO05D004718 1.2e-23 114.4 185 38.4
Sp3g29540 Schrenkiella parvula HOM05D003869 ORTHO05D004718 1.6e-23 114.0 197 38.1
AL3G52390 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 4.1e-19 99.4 119 50.4
AL4G18560 Arabidopsis lyrata HOM05D003869 ORTHO05D004718 2.5e-16 90.1 190 36.8
CARHR116940 Cardamine hirsuta HOM05D003869 ORTHO05D004718 9.4e-16 88.2 226 34.5
Carub.0004s0422 Capsella rubella HOM05D003869 ORTHO05D004718 5.2e-14 82.4 191 34.0
C09p12960 Brassica napus HOM05D003869 ORTHO05D032479 6.8e-14 82.0 98 44.9
BolC9t54188H Brassica oleracea HOM05D003869 ORTHO05D032479 6.8e-14 82.0 98 44.9
Thhalv10000199m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 2.6e-13 80.1 194 35.6
AL6G35370 Arabidopsis lyrata HOM05D000151 ORTHO05D011749 9.8e-13 78.2 165 32.1
CARHR117030 Cardamine hirsuta HOM05D003869 ORTHO05D004718 1.7e-12 77.4 193 33.7
Ciclev10028612m.g Citrus clementina HOM05D000151 ORTHO05D000074 3.7e-12 76.3 247 24.7
Carub.0006s2177 Capsella rubella HOM05D000151 ORTHO05D011749 4.9e-12 75.9 165 32.7
Eucgr.I01468 Eucalyptus grandis HOM05D000151 ORTHO05D000074 8.3e-12 75.1 147 34.7
COL.COLO4_18004 Corchorus olitorius HOM05D000151 ORTHO05D000074 4.1e-11 72.8 178 25.8
Sc18g0006120 Simmondsia chinensis HOM05D000151 ORTHO05D000074 4.1e-11 72.8 168 29.2
Eucgr.I01470 Eucalyptus grandis HOM05D000151 ORTHO05D000074 5.4e-11 72.4 189 28.0
BolC3t21081H Brassica oleracea HOM05D000151 ORTHO05D011749 7.0e-11 72.0 160 31.2
Eucgr.I01472 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.2e-10 71.2 145 33.8
ClCG00G001890 Citrullus lanatus HOM05D000151 ORTHO05D000074 1.6e-10 70.9 240 27.9
ClCG02G011070 Citrullus lanatus HOM05D000151 ORTHO05D000074 1.6e-10 70.9 240 27.9
Thhalv10000675m.g Eutrema salsugineum HOM05D003869 ORTHO05D004718 1.6e-10 70.9 152 39.5
Potri.004G179685 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.6e-10 70.9 207 28.0
vmacro17118 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 2.0e-10 70.5 174 28.2
CARHR118620 Cardamine hirsuta HOM05D003869 ORTHO05D004718 2.7e-10 70.1 146 37.7
C04p54520 Brassica napus HOM05D003869 ORTHO05D004718 3.5e-10 69.7 223 29.1
COL.COLO4_18005 Corchorus olitorius HOM05D000151 ORTHO05D000074 4.5e-10 69.3 204 27.5
Duzib132G0877 Durio zibethinus HOM05D000151 ORTHO05D000074 4.5e-10 69.3 219 25.1
Haze_03686 Corylus avellana HOM05D000151 ORTHO05D000074 5.9e-10 68.9 235 27.7
TAR628G0991 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.0e-09 68.2 212 31.6
Sabra04G0121100 Salix brachista HOM05D000151 ORTHO05D000074 1.3e-09 67.8 206 27.2
SHI05785 Sapria himalayana HOM05D000151 ORTHO05D000074 1.3e-09 67.8 241 26.6
BcaC02g08414 Brassica carinata HOM05D003869 ORTHO05D004718 1.7e-09 67.4 223 28.7
BolC4t26995H Brassica oleracea HOM05D003869 ORTHO05D004718 1.7e-09 67.4 223 28.7
Cfa007041 Carpinus fangiana HOM05D002155 ORTHO05D002215 1.7e-09 67.4 238 28.2
Cfa007044 Carpinus fangiana HOM05D000151 ORTHO05D000074 1.7e-09 67.4 238 27.7
A04p19130 Brassica napus HOM05D003869 ORTHO05D004718 2.3e-09 67.0 223 29.1
MELO3C013657.2 Cucumis melo HOM05D000151 ORTHO05D000074 2.9e-09 66.6 211 26.1
Sopen01g053970 Solanum pennellii HOM05D000151 ORTHO05D000074 2.9e-09 66.6 197 27.4
CANSAT25G3017 Cannabis sativa HOM05D000151 ORTHO05D000074 3.8e-09 66.2 204 27.9
DCAR_022831 Daucus carota HOM05D000151 ORTHO05D000074 5.0e-09 65.9 178 28.7
TWI75G0953 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 5.0e-09 65.9 235 23.4
Duzib052G1153 Durio zibethinus HOM05D000151 ORTHO05D000074 6.6e-09 65.5 174 28.7
Sed0002173 Sechium edule HOM05D000151 ORTHO05D000074 6.6e-09 65.5 178 29.8
CsaV3_6G012680 Cucumis sativus L. HOM05D000151 ORTHO05D000074 8.6e-09 65.1 203 27.1
Haze_03688 Corylus avellana HOM05D002155 ORTHO05D002215 1.1e-08 64.7 238 28.2
Aqoxy6G01889 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.5e-08 64.3 212 26.4
AUR62012982 Chenopodium quinoa HOM05D000151 ORTHO05D000074 1.5e-08 64.3 159 29.6
A04p19140 Brassica napus HOM05D003869 ORTHO05D004718 1.9e-08 63.9 223 28.7
BraA04t17514Z Brassica rapa HOM05D003869 ORTHO05D004718 1.9e-08 63.9 223 28.7
Dinv14141 Davidia involucrata HOM05D000151 ORTHO05D000074 1.9e-08 63.9 153 30.1
Potri.009G140000 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.9e-08 63.9 208 27.9
CiPaw.05G087200 Carya illinoinensis HOM05D000151 ORTHO05D000074 2.5e-08 63.5 173 31.2
PGR142G2333 Punica granatum HOM05D000151 ORTHO05D000074 2.5e-08 63.5 173 28.3
Rhsim05G0163300 Rhododendron simsii HOM05D001789 ORTHO05D001755 2.5e-08 63.5 176 27.3
Cfa005316 Carpinus fangiana HOM05D000151 ORTHO05D000074 3.3e-08 63.2 143 32.2
Eucgr.I01474 Eucalyptus grandis HOM05D000151 ORTHO05D000074 3.3e-08 63.2 201 28.4
PGSC0003DMG400018632 Solanum tuberosum HOM05D000151 ORTHO05D000074 4.3e-08 62.8 197 26.4
Haze_02069 Corylus avellana HOM05D000151 ORTHO05D000074 5.6e-08 62.4 146 31.5
Aa31LG11G3330 Aethionema arabicum HOM05D000151 ORTHO05D011749 9.5e-08 61.6 181 27.1
CSS0014442 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 9.5e-08 61.6 215 27.9
Peaxi162Scf00362g00315 Petunia axillaris HOM05D000151 ORTHO05D000074 9.5e-08 61.6 188 28.7
CAN.G1235.35 Capsicum annuum HOM05D000151 ORTHO05D000074 1.2e-07 61.2 196 26.0
PSO675G1630 Papaver somniferum HOM05D000151 ORTHO05D000074 1.2e-07 61.2 161 28.6
Thecc.02G052700 Theobroma cacao HOM05D000151 ORTHO05D000074 1.2e-07 61.2 153 29.4
Gohir.D04G169400 Gossypium hirsutum HOM05D000151 ORTHO05D000074 1.6e-07 60.8 206 26.2
Sed0002957 Sechium edule HOM05D000151 ORTHO05D000074 1.6e-07 60.8 164 27.4
PGSC0003DMG400006040 Solanum tuberosum HOM05D000151 ORTHO05D000074 1.6e-07 60.8 152 27.6
Haze_21631 Corylus avellana HOM05D000151 ORTHO05D000074 2.1e-07 60.5 225 28.4
Gorai.012G157500 Gossypium raimondii HOM05D000151 ORTHO05D000074 2.1e-07 60.5 206 26.2
Peaxi162Scf00300g00317 Petunia axillaris HOM05D000151 ORTHO05D000074 2.1e-07 60.5 128 31.2
Rhsim05G0163400 Rhododendron simsii HOM05D001789 ORTHO05D001755 2.1e-07 60.5 176 26.7
Solyc01g111920.3 Solanum lycopersicum HOM05D000151 ORTHO05D000074 2.1e-07 60.5 197 26.4
Gohir.D04G169200 Gossypium hirsutum HOM05D000151 ORTHO05D000074 2.8e-07 60.1 206 26.2
Sabra05G0086300 Salix brachista HOM05D000151 ORTHO05D000074 2.8e-07 60.1 243 25.9
Eucgr.I01467 Eucalyptus grandis HOM05D000151 ORTHO05D000074 3.6e-07 59.7 193 25.4
Nn6g31857 Nelumbo nucifera HOM05D000151 ORTHO05D000074 3.6e-07 59.7 246 25.2
PSO541G6252 Papaver somniferum HOM05D000151 ORTHO05D000074 3.6e-07 59.7 161 28.6
Prupe.8G172400 Prunus persica HOM05D000151 ORTHO05D000074 3.6e-07 59.7 171 26.9
CARHR107350 Cardamine hirsuta HOM05D000151 ORTHO05D000074 4.7e-07 59.3 159 28.3
Eucgr.I01469 Eucalyptus grandis HOM05D000151 ORTHO05D000074 4.7e-07 59.3 184 27.2
Nn6g31858 Nelumbo nucifera HOM05D000151 ORTHO05D000074 4.7e-07 59.3 202 27.7
Sabra09G0108800 Salix brachista HOM05D000151 ORTHO05D000074 4.7e-07 59.3 200 25.5
Haze_03687 Corylus avellana HOM05D000151 ORTHO05D000074 6.1e-07 58.9 228 27.2
Psat5g209160 Pisum sativum HOM05D000151 ORTHO05D000074 6.1e-07 58.9 143 30.8
MBI17_g17504_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 8.0e-07 58.5 147 29.9
Manes.04G069000 Manihot esculenta HOM05D000151 ORTHO05D000074 8.0e-07 58.5 207 24.6
RcHm_v2.0_Chr6g0279451 Rosa chinensis HOM05D000151 ORTHO05D000074 8.0e-07 58.5 177 26.6
PGSC0003DMG400001546 Solanum tuberosum HOM05D000151 ORTHO05D000074 8.0e-07 58.5 186 25.8
Duzib132G0179 Durio zibethinus HOM05D000151 ORTHO05D000074 1.0e-06 58.2 151 29.1
FAN15G2361 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.0e-06 58.2 176 25.6
Medtr3g029750 Medicago truncatula HOM05D000151 ORTHO05D000074 1.0e-06 58.2 165 26.1
AT2G17036 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 1.4e-06 57.8 139 33.1
Gohir.A04G132412 Gossypium hirsutum HOM05D000151 ORTHO05D000074 1.4e-06 57.8 206 25.2
QL06p052345 Quercus lobata HOM05D000151 ORTHO05D000074 1.4e-06 57.8 241 28.2
Eucgr.J02501 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.8e-06 57.4 167 29.9
FAN20G3023 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.8e-06 57.4 176 25.0
BcaC04g23022 Brassica carinata HOM05D003869 ORTHO05D032479 2.3e-06 57.0 98 38.8
FAN24G3248 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.3e-06 57.0 176 25.6
Eucgr.J02498 Eucalyptus grandis HOM05D000151 ORTHO05D000074 4.0e-06 56.2 155 28.4
FAN28G1965 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.0e-06 56.2 200 26.5
Psat4g103080 Pisum sativum HOM05D000151 ORTHO05D000074 4.0e-06 56.2 238 24.4
Eucgr.J02503 Eucalyptus grandis HOM05D000151 ORTHO05D000074 5.2e-06 55.8 166 31.9
Nitab4.5_0003585g0020 Nicotiana tabacum HOM05D001876 ORTHO05D000074 5.2e-06 55.8 182 26.4
FvH4_2g15930 Fragaria vesca HOM05D000151 ORTHO05D000074 6.8e-06 55.5 176 25.0
PGSC0003DMG400006057 Solanum tuberosum HOM05D000151 ORTHO05D000074 6.8e-06 55.5 142 26.8
Eucgr.J02497 Eucalyptus grandis HOM05D000151 ORTHO05D000074 8.9e-06 55.1 159 28.9
Nitab4.5_0003679g0070 Nicotiana tabacum HOM05D000151 ORTHO05D000074 8.9e-06 55.1 196 27.0
Potri.005G105200 Populus trichocarpa HOM05D000151 ORTHO05D000074 8.9e-06 55.1 186 28.0


User provided reference genes

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