Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.8e-107 392.9 249 100.0
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 7.1e-51 204.9 174 82.2
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 4.3e-48 195.7 174 78.7
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 4.3e-48 195.7 174 78.7
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.1e-43 181.0 170 75.9
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.6e-42 177.2 171 72.5
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 6.0e-42 175.3 171 63.2
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.3e-41 173.3 171 64.9
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.9e-41 172.6 166 61.4
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.3e-39 167.5 171 61.4
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 1.6e-39 167.2 171 67.8
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.2e-39 166.8 171 67.8
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 6.3e-39 165.2 170 65.9
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 6.3e-39 165.2 170 65.9
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.1e-38 164.5 171 58.5
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 2.4e-38 163.3 171 58.5
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 5.3e-38 162.2 171 57.3
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 4.5e-37 159.1 171 57.9
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 2.2e-36 156.8 173 55.5
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 2.1e-34 150.2 170 74.1
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.1e-34 150.2 170 61.2
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 4.6e-34 149.1 173 69.9
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 1.3e-28 131.0 72 90.3
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.1e-27 127.9 175 43.4
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 3.2e-27 126.3 173 45.1
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 5.5e-27 125.6 176 43.8
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.7e-26 123.2 170 43.5
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.7e-26 123.2 171 43.9
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 3.6e-26 122.9 170 44.1
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 7.9e-26 121.7 170 42.9
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 2.3e-25 120.2 175 42.9
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.3e-25 120.2 179 43.6
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 5.1e-25 119.0 176 47.2
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 6.7e-25 118.6 173 42.2
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 8.8e-25 118.2 176 42.6
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.1e-24 117.9 171 42.1
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-24 117.5 185 42.2
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.0e-24 117.1 169 42.6
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 2.6e-24 116.7 173 42.8
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 5.7e-24 115.5 165 42.4
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 5.7e-24 115.5 171 43.3
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 7.4e-24 115.2 176 48.9
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.7e-24 114.8 183 42.1
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.7e-23 114.0 172 40.1
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 2.2e-23 113.6 171 41.5
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 3.7e-23 112.8 178 42.1
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.7e-23 112.8 172 41.9
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.7e-23 112.8 176 42.0
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 4.8e-23 112.5 167 42.5
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 4.8e-23 112.5 172 39.5
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 6.3e-23 112.1 171 42.1
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 6.3e-23 112.1 171 43.9
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.1e-22 111.3 171 40.9
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.4e-22 110.9 171 42.7
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.8e-22 110.5 169 40.8
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.4e-22 110.2 176 41.5
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 3.1e-22 109.8 175 45.7
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 3.1e-22 109.8 179 41.9
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 4.1e-22 109.4 176 37.5
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 4.1e-22 109.4 159 40.9
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.3e-22 109.0 169 40.8
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 7.0e-22 108.6 171 42.7
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 9.1e-22 108.2 169 41.4
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 1.2e-21 107.8 175 40.6
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.2e-21 107.8 163 41.1
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.5e-21 107.5 165 41.2
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.5e-21 107.5 178 38.8
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 2.0e-21 107.1 165 40.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 2.6e-21 106.7 177 38.4
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 3.4e-21 106.3 161 40.4
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 5.9e-21 105.5 179 39.7
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 7.7e-21 105.1 163 39.9
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 7.7e-21 105.1 169 41.4
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.0e-20 104.8 167 40.1
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.3e-20 104.4 170 38.8
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 2.2e-20 103.6 170 38.2
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.9e-20 103.2 170 38.8
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 5.0e-20 102.4 163 39.3
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 6.5e-20 102.1 175 36.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 6.5e-20 102.1 159 41.5
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 6.5e-20 102.1 161 37.3
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 8.5e-20 101.7 163 38.0
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.4e-19 100.9 174 46.0
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.4e-19 100.9 155 40.0
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.4e-19 100.9 179 34.6
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.9e-19 100.5 175 45.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.9e-19 100.5 163 42.3
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 4.2e-19 99.4 170 39.4
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 4.2e-19 99.4 156 40.4
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.2e-19 99.4 180 35.6
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.2e-18 97.8 165 39.4
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.2e-18 97.8 178 37.1
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 1.2e-18 97.8 168 42.3
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.7e-18 96.7 159 39.0
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 4.7e-18 95.9 167 38.3
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 2.3e-17 93.6 175 40.6
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 3.9e-17 92.8 175 34.3
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 5.2e-17 92.4 169 36.7
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.5e-16 90.9 176 42.6
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.5e-16 90.9 166 38.0
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 4.4e-16 89.4 173 36.4
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.3e-15 87.8 178 33.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.7e-15 87.4 165 34.5
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 2.2e-15 87.0 167 36.5
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 2.8e-15 86.7 152 36.2
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 6.3e-15 85.5 170 37.1
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.4e-14 84.3 165 33.3
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.4e-14 84.3 170 33.5
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.4e-14 84.3 193 32.6
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 5.3e-14 82.4 136 36.8
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 5.3e-14 82.4 167 40.1
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.6e-13 80.9 166 33.1
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.0e-13 80.5 136 36.0
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.0e-12 78.2 181 31.5
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.8e-12 76.3 84 50.0
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.8e-12 76.3 164 31.7
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.5e-11 74.3 84 45.2
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.9e-11 73.9 146 38.4
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 5.5e-11 72.4 160 35.6
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 6.1e-10 68.9 37 97.3
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.2e-08 64.7 162 27.8
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 5.7e-08 62.4 66 47.0
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.8e-07 60.1 160 27.5


User provided reference genes

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