Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 6.9e-84 313.9 157 100.0
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 5.1e-71 271.2 157 87.9
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.0e-67 259.2 156 87.2
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.0e-67 259.2 156 87.2
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.0e-67 259.2 156 87.2
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.7e-66 256.1 149 87.9
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 2.2e-66 255.8 157 85.4
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 6.5e-66 254.2 149 87.2
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 7.9e-64 247.3 157 80.9
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 1.0e-63 246.9 157 80.9
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 2.3e-63 245.7 158 81.6
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.9e-62 242.7 159 81.1
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 9.7e-62 240.4 159 80.5
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.6e-61 239.6 159 80.5
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.1e-61 239.2 163 79.8
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 8.2e-61 237.3 159 79.2
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 8.2e-61 237.3 159 79.2
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.4e-57 226.5 166 74.7
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.3e-55 219.9 146 76.0
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 3.0e-55 218.8 146 76.7
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 3.0e-55 218.8 146 76.7
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 3.9e-55 218.4 146 76.0
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.1e-54 216.9 146 76.0
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 9.1e-52 207.2 146 74.0
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 2.0e-51 206.1 156 70.5
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 7.9e-48 194.1 151 73.5
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.1e-41 173.7 158 63.9
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.1e-41 173.7 158 63.9
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.3e-37 160.2 157 61.1
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 1.2e-22 110.5 159 44.0
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 4.4e-22 108.6 161 44.1
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.4e-20 101.7 150 41.3
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 5.4e-20 101.7 139 42.4
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.2e-19 100.5 152 41.4
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 3.5e-19 99.0 155 43.2
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 4.5e-19 98.6 127 42.5
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 4.5e-19 98.6 109 45.9
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 5.9e-19 98.2 146 41.1
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.9e-19 98.2 146 41.1
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 7.7e-19 97.8 125 44.0
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.3e-18 97.1 147 41.5
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.7e-18 96.7 165 40.0
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.7e-18 96.7 152 40.1
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.3e-18 96.3 149 40.3
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 2.9e-18 95.9 137 41.6
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 3.8e-18 95.5 149 40.3
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 5.0e-18 95.1 120 44.2
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 5.0e-18 95.1 120 44.2
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 6.5e-18 94.7 141 39.0
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 6.5e-18 94.7 152 40.1
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 8.6e-18 94.4 162 37.0
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.1e-17 94.0 152 39.5
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.1e-17 94.0 153 38.6
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.1e-17 94.0 123 44.7
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.1e-17 94.0 125 39.2
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 1.5e-17 93.6 120 45.0
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 1.9e-17 93.2 146 39.0
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.9e-17 93.2 159 40.9
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 1.9e-17 93.2 127 38.6
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 1.9e-17 93.2 121 40.5
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.9e-17 93.2 108 48.1
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 2.5e-17 92.8 142 40.8
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.5e-17 91.7 141 39.0
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 7.2e-17 91.3 112 44.6
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 7.2e-17 91.3 128 46.9
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 9.5e-17 90.9 147 41.5
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.2e-16 90.5 132 40.2
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.2e-16 90.5 157 38.2
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.1e-16 89.7 139 42.4
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.8e-16 89.4 162 39.5
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 3.6e-16 89.0 154 40.9
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 3.6e-16 89.0 155 41.9
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 6.1e-16 88.2 145 41.4
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 6.1e-16 88.2 129 44.2
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 6.1e-16 88.2 117 43.6
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 8.0e-16 87.8 90 51.1
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 8.0e-16 87.8 163 39.9
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 8.0e-16 87.8 145 41.4
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.4e-15 87.0 138 38.4
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.4e-15 87.0 129 41.1
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.4e-15 87.0 153 35.9
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.4e-15 87.0 133 39.8
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.8e-15 86.7 163 39.9
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.8e-15 86.7 127 44.1
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.8e-15 86.7 146 40.4
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 4.0e-15 85.5 133 38.3
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 5.2e-15 85.1 161 36.6
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 6.8e-15 84.7 117 41.9
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 8.9e-15 84.3 116 45.7
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.5e-14 83.6 125 42.4
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.0e-14 83.2 142 38.0
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 2.0e-14 83.2 135 37.8
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 2.0e-14 83.2 157 35.0
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.0e-14 83.2 135 40.7
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.6e-14 82.8 137 36.5
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 2.6e-14 82.8 138 39.9
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 3.4e-14 82.4 127 40.2
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 4.4e-14 82.0 132 40.9
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.7e-14 81.6 116 44.8
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 5.7e-14 81.6 155 34.8
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 5.7e-14 81.6 101 43.6
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 7.5e-14 81.3 113 38.9
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 7.5e-14 81.3 134 40.3
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.3e-13 80.5 121 39.7
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.3e-13 80.5 124 42.7
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.3e-13 80.5 137 37.2
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.7e-13 80.1 155 36.1
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 1.7e-13 80.1 102 42.2
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.2e-13 79.7 106 43.4
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.8e-13 79.3 155 36.1
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.8e-13 79.3 121 43.0
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 3.7e-13 79.0 169 35.5
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 3.7e-13 79.0 76 53.9
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.1e-12 77.4 101 43.6
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.1e-12 77.4 144 37.5
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 1.4e-12 77.0 123 41.5
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 4.1e-12 75.5 167 34.1
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 9.2e-12 74.3 73 52.1
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 1.2e-11 73.9 114 39.5
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.6e-11 73.6 136 36.8
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.0e-11 73.2 145 36.6
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.7e-11 72.8 152 42.1
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.5e-11 72.4 103 38.8
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 5.9e-11 71.6 151 33.8
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 7.8e-11 71.2 157 34.4
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.0e-10 70.9 166 31.9
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 6.6e-10 68.2 91 44.0
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 1.5e-09 67.0 112 38.4
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 3.3e-09 65.9 119 34.5
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 1.2e-08 63.9 102 40.2
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 2.1e-08 63.2 96 35.4
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.8e-08 62.8 111 36.0
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 2.8e-08 62.8 56 53.6
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.4e-07 60.5 55 52.7
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 4.0e-07 58.9 122 29.5
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 3.4e-06 55.8 99 32.3
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 4.4e-06 55.5 107 36.4
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.4e-06 55.5 151 29.8
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 5.8e-06 55.1 124 29.0
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 5.8e-06 55.1 90 34.4
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 7.5e-06 54.7 108 29.6


User provided reference genes

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