Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31563 Brassica carinata HOM05D029035 ORTHO05D009714 1.7e-38 162.2 78 100.0
BcaB07g31575 Brassica carinata HOM05D000022 ORTHO05D009714 7.7e-28 126.7 62 95.2
Thhalv10027911m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 2.9e-19 98.2 62 71.0
BcaB07g31577 Brassica carinata HOM05D000022 ORTHO05D009714 2.6e-15 85.1 76 57.9
AL2G11650 Arabidopsis lyrata HOM05D000022 ORTHO05D009714 5.7e-15 84.0 78 55.1
CARHR047770 Cardamine hirsuta HOM05D000022 ORTHO05D009714 1.3e-14 82.8 67 59.7
Thhalv10028048m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 1.7e-14 82.4 81 53.1
C04p29500 Brassica napus HOM05D000022 ORTHO05D009714 2.9e-14 81.6 66 59.1
Sp2g01050 Schrenkiella parvula HOM05D000022 ORTHO05D009714 2.9e-14 81.6 56 66.1
A09p13760 Brassica napus HOM05D000022 ORTHO05D009714 3.7e-14 81.3 66 57.6
BraA09t37028Z Brassica rapa HOM05D000022 ORTHO05D009714 3.7e-14 81.3 66 57.6
BcaB07g31405 Brassica carinata HOM05D000022 ORTHO05D009714 4.9e-14 80.9 81 50.6
C09p16400 Brassica napus HOM05D000022 ORTHO05D009714 8.3e-14 80.1 66 57.6
BolC9t54550H Brassica oleracea HOM05D000022 ORTHO05D009714 8.3e-14 80.1 66 57.6
BcaB07g31566 Brassica carinata HOM05D000022 ORTHO05D009714 1.1e-13 79.7 64 65.6
BcaB07g31571 Brassica carinata HOM05D000022 ORTHO05D009714 1.1e-13 79.7 64 65.6
C09p16430 Brassica napus HOM05D000022 ORTHO05D009714 1.1e-13 79.7 64 65.6
BolC9t54553H Brassica oleracea HOM05D000022 ORTHO05D009714 1.1e-13 79.7 64 65.6
Carub.0002s0127 Capsella rubella HOM05D000022 ORTHO05D009714 1.1e-13 79.7 67 56.7
Carub.0002s0132 Capsella rubella HOM05D000022 ORTHO05D009714 1.1e-13 79.7 67 58.2
Sp2g01060 Schrenkiella parvula HOM05D000022 ORTHO05D009714 1.1e-13 79.7 64 65.6
Sp2g01070 Schrenkiella parvula HOM05D000022 ORTHO05D009714 1.1e-13 79.7 66 57.6
BcaB07g31567 Brassica carinata HOM05D029035 ORTHO05D095724 1.4e-13 79.3 38 94.7
BcaB07g31572 Brassica carinata HOM05D029035 ORTHO05D096217 1.4e-13 79.3 38 94.7
BolC4t24485H Brassica oleracea HOM05D000022 ORTHO05D009714 1.4e-13 79.3 66 57.6
A09p15440 Brassica napus HOM05D000022 ORTHO05D009714 3.2e-13 78.2 67 56.7
BraA09t37185Z Brassica rapa HOM05D000022 ORTHO05D009714 3.2e-13 78.2 67 56.7
Thhalv10023893m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 3.2e-13 78.2 67 56.7
BcaC04g22494 Brassica carinata HOM05D000022 ORTHO05D009714 4.1e-13 77.8 81 49.4
C09p18700 Brassica napus HOM05D000022 ORTHO05D009714 4.1e-13 77.8 67 55.2
AT1G63590 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 5.4e-13 77.4 63 63.5
BcaB07g31576 Brassica carinata HOM05D000022 ORTHO05D009714 5.4e-13 77.4 67 55.2
A03p43150 Brassica napus HOM05D000022 ORTHO05D009714 7.0e-13 77.0 64 62.5
CARHR047750 Cardamine hirsuta HOM05D000022 ORTHO05D009714 9.2e-13 76.6 75 56.0
AT1G63550 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 1.2e-12 76.3 66 57.6
AT1G63600 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 1.6e-12 75.9 80 51.2
Sp2g01040 Schrenkiella parvula HOM05D000022 ORTHO05D009714 1.6e-12 75.9 67 55.2
CARHR047790 Cardamine hirsuta HOM05D000022 ORTHO05D009714 2.0e-12 75.5 80 50.0
AT1G63570 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 2.7e-12 75.1 75 53.3
Carub.0002s0128 Capsella rubella HOM05D000022 ORTHO05D009714 4.6e-12 74.3 76 52.6
BcaC01g03392 Brassica carinata HOM05D000022 ORTHO05D009714 7.8e-12 73.6 64 59.4
BcaC02g10384 Brassica carinata HOM05D000022 ORTHO05D009714 1.3e-11 72.8 60 58.3
BcaNung07002 Brassica carinata HOM05D000022 ORTHO05D009714 1.3e-11 72.8 60 58.3
THA.LOC104823584 Tarenaya hassleriana HOM05D000022 ORTHO05D009714 2.3e-11 72.0 64 57.8
BolC3t17564H Brassica oleracea HOM05D000022 ORTHO05D009714 2.9e-11 71.6 54 68.5
BcaB03g14633 Brassica carinata HOM05D000022 ORTHO05D009714 3.9e-11 71.2 67 56.7
Carub.0002s0129 Capsella rubella HOM05D000022 ORTHO05D009714 5.0e-11 70.9 64 59.4
CARHR047810 Cardamine hirsuta HOM05D000022 ORTHO05D009714 1.9e-10 68.9 79 50.6
Carub.0002s0131 Capsella rubella HOM05D000022 ORTHO05D009714 5.6e-10 67.4 64 57.8
C09p16410 Brassica napus HOM05D000022 ORTHO05D009714 9.5e-10 66.6 45 66.7
BolC9t54551H Brassica oleracea HOM05D000022 ORTHO05D009714 9.5e-10 66.6 45 66.7
BolC9t54768H Brassica oleracea HOM05D000022 ORTHO05D009714 9.5e-10 66.6 50 62.0
AL2G11630 Arabidopsis lyrata HOM05D000022 ORTHO05D009714 1.6e-09 65.9 64 60.9
AT1G63580 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 6.2e-09 63.9 64 59.4
CARHR047800 Cardamine hirsuta HOM05D000022 ORTHO05D009714 6.2e-09 63.9 66 48.5
Carub.0002s0130 Capsella rubella HOM05D000022 ORTHO05D009714 1.0e-08 63.2 63 57.1
Sp7g00650 Schrenkiella parvula HOM05D000022 ORTHO05D009714 1.0e-08 63.2 64 50.0
SpUn0010_0130 Schrenkiella parvula HOM05D000022 ORTHO05D009714 1.0e-08 63.2 64 50.0
AL7G48170 Arabidopsis lyrata HOM05D000022 ORTHO05D009714 2.3e-08 62.0 64 46.9
CARHR047760 Cardamine hirsuta HOM05D000022 ORTHO05D009714 2.3e-08 62.0 65 55.4
C03p53000 Brassica napus HOM05D000022 ORTHO05D009714 5.2e-08 60.8 50 64.0
Thhalv10027847m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 6.8e-08 60.5 64 48.4
Ciclev10000581m.g Citrus clementina HOM05D000022 ORTHO05D000071 8.9e-08 60.1 67 46.3
Ciclev10000653m.g Citrus clementina HOM05D000022 ORTHO05D000071 8.9e-08 60.1 67 46.3
Thhalv10028233m.g Eutrema salsugineum HOM05D000022 ORTHO05D009714 8.9e-08 60.1 64 48.4
CARHR047820 Cardamine hirsuta HOM05D000022 ORTHO05D009714 1.2e-07 59.7 63 47.6
AL2G11640 Arabidopsis lyrata HOM05D000022 ORTHO05D009714 1.5e-07 59.3 68 50.0
Ciclev10003850m.g Citrus clementina HOM05D000022 ORTHO05D000306 4.4e-07 57.8 67 44.8
THA.LOC104809393 Tarenaya hassleriana HOM05D000022 ORTHO05D009714 4.4e-07 57.8 75 44.0
Nn1g06974 Nelumbo nucifera HOM05D000022 ORTHO05D000071 7.5e-07 57.0 80 42.5
Manes.16G013700 Manihot esculenta HOM05D000022 ORTHO05D000071 9.8e-07 56.6 70 37.1
BcaC07g41092 Brassica carinata HOM05D000022 ORTHO05D000071 1.3e-06 56.2 63 46.0
Nn1g06968 Nelumbo nucifera HOM05D000022 ORTHO05D000071 1.3e-06 56.2 66 47.0
Gohir.D10G016000 Gossypium hirsutum HOM05D000022 ORTHO05D000071 2.2e-06 55.5 56 48.2
Gorai.011G017800 Gossypium raimondii HOM05D000022 ORTHO05D000071 2.2e-06 55.5 56 48.2
TWI38G0205 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 2.2e-06 55.5 68 47.1
AUR62012603 Chenopodium quinoa HOM05D000022 ORTHO05D000071 2.9e-06 55.1 66 37.9
AT5G41300 Arabidopsis thaliana HOM05D000022 ORTHO05D009714 3.7e-06 54.7 64 43.8
Carub.0007s3421 Capsella rubella HOM05D000022 ORTHO05D009714 3.7e-06 54.7 63 47.6
BcaC02g08972 Brassica carinata HOM05D000022 ORTHO05D009714 4.9e-06 54.3 61 45.9
Gohir.A10G016200 Gossypium hirsutum HOM05D000022 ORTHO05D000071 4.9e-06 54.3 56 48.2
BcaB07g31562 Brassica carinata HOM05D029035 ORTHO05D009714 6.4e-06 53.9 48 62.5
Nn1g03701 Nelumbo nucifera HOM05D000022 ORTHO05D000071 6.4e-06 53.9 56 44.6
TWI38G1151 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 6.4e-06 53.9 71 40.8
Atru.chr6.3133 Acer truncatum HOM05D000022 ORTHO05D000071 8.3e-06 53.5 71 35.2
QL05p075815 Quercus lobata HOM05D000022 ORTHO05D000071 8.3e-06 53.5 71 40.8
QL05p076004 Quercus lobata HOM05D000022 ORTHO05D000071 8.3e-06 53.5 71 40.8
TWI63G1763 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 8.3e-06 53.5 68 44.1


User provided reference genes

Program Settings