Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.2e-131 473.4 267 100.0
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.8e-113 412.9 262 90.8
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.6e-112 409.8 262 89.3
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.0e-111 407.1 266 89.5
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.3e-106 390.2 261 87.0
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 2.0e-104 382.9 265 85.3
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.3e-98 363.6 259 76.4
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.2e-98 362.8 260 75.8
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 7.1e-73 278.1 263 68.1
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.8e-68 263.5 262 68.7
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 2.2e-66 256.5 274 61.7
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 6.1e-40 168.7 293 45.4
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 6.1e-40 168.7 293 45.4
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 2.0e-38 163.7 293 44.7
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.7e-37 160.6 295 43.7
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 6.3e-37 158.7 295 44.4
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 6.3e-37 158.7 286 48.6
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.3e-36 155.6 291 48.1
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 8.5e-34 148.3 284 45.8
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.4e-33 147.5 297 47.5
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.4e-33 144.8 291 46.4
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 2.4e-28 130.2 316 35.8
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.3e-26 124.4 191 49.7
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.1e-25 121.3 136 53.7
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 5.5e-25 119.0 136 52.2
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 5.5e-25 119.0 136 52.2
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 4.7e-24 115.9 140 54.3
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.4e-23 114.4 151 51.0
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 4.0e-23 112.8 161 51.6
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 8.8e-23 111.7 151 49.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 8.8e-23 111.7 151 49.0
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.5e-22 110.9 134 53.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 3.3e-22 109.8 156 48.1
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 4.4e-22 109.4 172 42.4
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.5e-22 108.6 151 48.3
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 2.2e-21 107.1 150 49.3
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 2.2e-21 107.1 159 42.1
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 2.8e-21 106.7 151 50.3
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 4.8e-21 105.9 152 57.2
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 6.3e-21 105.5 170 40.6
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 8.2e-21 105.1 206 46.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 8.2e-21 105.1 179 41.9
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.1e-20 104.8 156 46.8
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.1e-20 104.8 156 46.8
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.8e-20 104.0 124 59.7
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.4e-20 103.6 147 45.6
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-20 103.2 147 45.6
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-20 103.2 147 45.6
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 3.1e-20 103.2 142 48.6
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 4.1e-20 102.8 149 50.3
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 5.3e-20 102.4 151 42.4
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 9.1e-20 101.7 152 48.7
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 9.1e-20 101.7 152 48.7
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 3.5e-19 99.8 166 44.6
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 5.9e-19 99.0 160 41.9
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 5.9e-19 99.0 150 47.3
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 5.9e-19 99.0 168 42.9
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.3e-18 97.8 151 45.7
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.7e-18 97.4 165 43.0
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.9e-18 96.7 152 44.7
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.8e-18 96.3 163 47.2
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.5e-17 94.4 196 41.3
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.9e-17 94.0 158 39.2
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.2e-17 93.2 135 51.1
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 4.2e-17 92.8 225 35.1
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 4.2e-17 92.8 145 42.1
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.2e-17 92.8 182 47.8
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.5e-17 92.4 159 41.5
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.5e-17 92.4 159 41.5
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 5.5e-17 92.4 148 40.5
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 7.2e-17 92.0 154 38.3
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.6e-16 90.9 157 41.4
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.1e-16 90.5 151 40.4
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 2.1e-16 90.5 188 39.4
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.1e-16 90.5 169 42.6
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.1e-16 90.5 169 42.6
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 2.1e-16 90.5 154 47.4
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.6e-16 89.7 153 50.3
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 3.6e-16 89.7 168 41.7
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 6.1e-16 89.0 150 42.0
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 6.1e-16 89.0 143 45.5
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 6.1e-16 89.0 151 43.0
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.4e-15 87.8 156 44.9
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 1.4e-15 87.8 156 38.5
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.4e-15 87.8 170 43.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 2.3e-15 87.0 222 33.3
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 3.0e-15 86.7 138 50.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.0e-15 86.7 154 40.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 3.0e-15 86.7 153 41.8
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 4.0e-15 86.3 154 39.0
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 5.2e-15 85.9 160 36.2
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 5.2e-15 85.9 161 41.0
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 8.8e-15 85.1 161 48.4
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 8.8e-15 85.1 144 41.0
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.2e-14 84.7 180 35.0
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.2e-14 84.7 154 37.7
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.5e-14 84.3 161 45.3
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.0e-14 84.0 178 43.3
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 3.4e-14 83.2 143 43.4
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 4.4e-14 82.8 168 35.7
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 4.4e-14 82.8 162 37.0
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 5.7e-14 82.4 152 38.8
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.3e-13 81.3 154 36.4
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 1.3e-13 81.3 189 40.7
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.7e-13 80.9 163 41.7
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.2e-13 80.5 164 38.4
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.1e-12 78.2 220 33.6
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.1e-12 78.2 180 35.6
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.4e-12 77.8 179 38.0
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.8e-12 77.4 143 38.5
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 3.1e-12 76.6 185 33.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 5.4e-12 75.9 144 38.9
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 7.0e-12 75.5 170 40.0
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 9.1e-12 75.1 179 33.0
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.0e-11 73.9 155 42.6
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 7.7e-11 72.0 166 37.3
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 6.5e-10 68.9 132 36.4
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.2e-09 66.6 110 40.9
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 4.2e-09 66.2 140 35.7
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.2e-09 66.2 158 31.6
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 4.2e-09 66.2 149 38.9
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 9.4e-09 65.1 96 42.7
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.2e-08 64.7 84 44.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.1e-08 63.9 120 44.2
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.7e-08 63.5 98 41.8
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 3.6e-08 63.2 93 39.8
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.0e-07 61.6 93 38.7
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 1.4e-07 61.2 92 40.2
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 1.8e-07 60.8 101 38.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.3e-07 60.5 87 40.2
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 8.8e-07 58.5 113 43.4
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 8.8e-07 58.5 152 43.4
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.4e-06 56.6 50 60.0
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.5e-06 55.5 90 41.1


User provided reference genes

Program Settings