Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 6.6e-274 946.8 495 100.0
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.2e-237 825.5 463 94.2
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 2.0e-222 775.8 407 99.5
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 4.5e-222 774.6 407 99.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.7e-208 729.6 407 94.6
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 4.7e-195 684.9 473 78.4
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 4.1e-191 671.8 473 77.6
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 3.0e-178 629.0 365 92.3
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 4.5e-174 615.1 477 73.0
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 2.6e-169 599.4 482 69.7
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 6.4e-168 594.7 477 70.9
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.8e-163 579.3 475 70.9
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 1.6e-102 377.5 496 50.8
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 8.8e-93 345.1 507 48.7
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 7.5e-52 209.1 542 36.2
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.5e-49 200.3 554 34.8
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.3e-48 198.4 531 36.5
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.9e-47 194.5 479 35.3
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.6e-46 191.4 577 33.6
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 9.8e-44 182.2 493 35.7
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.4e-42 178.3 523 33.8
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 4.1e-42 176.8 526 33.8
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 7.0e-42 176.0 526 33.7
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 8.6e-40 169.1 507 35.3
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 1.4e-37 161.8 560 31.6
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.0e-36 157.9 384 35.7
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 7.5e-36 156.0 484 33.7
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 9.9e-36 155.6 542 33.0
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.2e-35 154.5 439 35.3
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 3.7e-35 153.7 539 32.8
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.1e-34 152.1 380 37.6
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.1e-34 152.1 558 30.5
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 2.4e-34 151.0 423 36.6
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.1e-34 150.2 436 32.8
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.6e-33 148.3 445 32.1
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 2.1e-33 147.9 402 35.3
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 2.1e-33 147.9 475 34.7
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 2.7e-33 147.5 556 30.4
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 2.7e-33 147.5 535 32.0
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 3.5e-33 147.1 521 30.7
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 4.6e-33 146.7 412 35.2
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 6.0e-33 146.4 413 35.1
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 6.0e-33 146.4 552 30.6
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 2.3e-32 144.4 234 45.3
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 2.3e-32 144.4 394 35.0
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 6.6e-32 142.9 404 35.9
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 6.6e-32 142.9 421 34.2
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 8.6e-32 142.5 426 31.7
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 8.6e-32 142.5 386 34.7
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.6e-32 142.5 410 34.4
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.5e-31 141.0 386 36.3
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 3.3e-31 140.6 462 33.1
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 4.3e-31 140.2 386 34.2
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 7.3e-31 139.4 424 32.5
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 9.5e-31 139.0 422 33.9
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 1.2e-30 138.7 385 35.1
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.6e-30 138.3 399 35.1
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.4e-29 135.2 404 34.4
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.4e-29 135.2 394 34.5
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.8e-29 134.8 419 31.7
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.4e-29 134.4 414 33.1
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 2.4e-29 134.4 397 34.3
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.2e-28 132.1 459 30.5
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 3.4e-28 130.6 414 31.9
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.9e-27 126.7 390 35.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 8.4e-27 125.9 242 40.1
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.1e-26 125.6 486 31.9
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 3.2e-26 124.0 424 30.7
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 5.4e-26 123.2 407 31.9
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 9.2e-26 122.5 488 30.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 9.2e-26 122.5 496 31.7
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 9.2e-26 122.5 499 32.3
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 4.6e-25 120.2 427 31.1
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 6.0e-25 119.8 529 28.0
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.3e-24 118.6 507 31.6
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.7e-24 118.2 498 27.5
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 5.1e-24 116.7 531 29.0
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 8.7e-24 115.9 388 31.2
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 1.9e-23 114.8 431 30.4
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 3.3e-23 114.0 531 29.0
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 7.3e-23 112.8 552 29.2
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 7.3e-23 112.8 375 32.5
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.6e-22 111.7 394 31.7
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.1e-21 109.0 490 27.6
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.8e-21 108.2 421 29.0
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 3.1e-21 107.5 520 29.0
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 6.9e-21 106.3 320 33.1
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 6.9e-21 106.3 320 33.1
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 6.9e-21 106.3 473 29.4
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 9.0e-21 105.9 502 29.7
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.2e-20 105.5 527 28.1
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.9e-19 100.9 433 28.2
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.9e-18 98.2 451 28.6
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.4e-18 96.7 487 29.0
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 7.1e-18 96.3 392 28.8
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 7.8e-17 92.8 344 29.9
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 7.8e-17 92.8 167 40.7
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-16 92.0 374 31.6
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.7e-16 91.7 344 29.9
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 6.6e-16 89.7 466 29.2
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.6e-15 86.7 496 27.6
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.3e-14 85.5 160 38.1
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 2.8e-14 84.3 398 27.9
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.8e-14 84.3 437 29.1
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 3.6e-14 84.0 433 28.6
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.8e-13 81.6 405 27.9
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 4.0e-13 80.5 331 31.1
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 4.2e-10 70.5 383 28.5
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 5.4e-10 70.1 332 28.3
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.2e-09 68.9 352 28.1
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.5e-07 62.0 344 28.5
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 4.3e-07 60.5 454 26.0


User provided reference genes

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