Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31466 Brassica carinata HOM05D003645 ORTHO05D004395 2.3e-62 243.0 242 100.0
A09p14690 Brassica napus HOM05D003645 ORTHO05D004395 1.3e-57 227.3 245 91.0
BraA09t37115Z Brassica rapa HOM05D003645 ORTHO05D004395 1.3e-57 227.3 245 91.0
C09p17780 Brassica napus HOM05D003645 ORTHO05D004395 2.4e-51 206.5 248 87.1
BolC9t54676H Brassica oleracea HOM05D003645 ORTHO05D004395 1.2e-50 204.1 248 86.7
Sp2g00290 Schrenkiella parvula HOM05D003645 ORTHO05D004395 4.3e-45 185.7 245 79.2
Thhalv10023571m.g Eutrema salsugineum HOM05D003645 ORTHO05D004395 7.2e-40 168.3 250 74.8
AL2G10400 Arabidopsis lyrata HOM05D003645 ORTHO05D004395 3.0e-38 162.9 265 70.9
CARHR046480 Cardamine hirsuta HOM05D003645 ORTHO05D004395 1.5e-37 160.6 248 74.6
Carub.0002s0032 Capsella rubella HOM05D003645 ORTHO05D004395 8.2e-36 154.8 263 71.5
Aa31LG2G1450 Aethionema arabicum HOM05D003645 ORTHO05D004395 1.4e-30 137.5 277 67.5
AT1G64450 Arabidopsis thaliana HOM05D003645 ORTHO05D004395 2.2e-28 130.2 258 66.7
THA.LOC104809326 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 2.4e-27 126.7 249 53.0
THA.LOC104817593 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 2.7e-23 113.2 245 43.3
Duzib084G0645 Durio zibethinus HOM05D003645 ORTHO05D004395 3.8e-17 92.8 63 71.4
Glyma.05G217500 Glycine max HOM05D003645 ORTHO05D004395 1.5e-16 90.9 68 64.7
Gohir.A12G237400 Gossypium hirsutum HOM05D003645 ORTHO05D004395 1.5e-16 90.9 242 30.2
Lj2P165T30 Lonicera japonica HOM05D003645 ORTHO05D004395 1.9e-16 90.5 68 69.1
Gohir.D12G238600 Gossypium hirsutum HOM05D003645 ORTHO05D004395 2.5e-16 90.1 242 30.2
Gorai.008G255500 Gossypium raimondii HOM05D003645 ORTHO05D004395 2.5e-16 90.1 242 30.2
Glyma.08G023500 Glycine max HOM05D003645 ORTHO05D004395 3.2e-16 89.7 68 63.2
VMungo0251G3746 Vigna mungo HOM05D003645 ORTHO05D004395 3.2e-16 89.7 68 63.2
Phvul.002G298900 Phaseolus vulgaris HOM05D003645 ORTHO05D004395 5.5e-16 89.0 71 59.2
Thecc.03G299800 Theobroma cacao HOM05D003645 ORTHO05D004395 7.2e-16 88.6 71 64.8
Gohir.D03G083900 Gossypium hirsutum HOM05D003645 ORTHO05D004395 9.4e-16 88.2 68 66.2
Gorai.003G078700 Gossypium raimondii HOM05D003645 ORTHO05D004395 9.4e-16 88.2 68 66.2
Manes.02G009000 Manihot esculenta HOM05D003645 ORTHO05D004395 9.4e-16 88.2 70 60.0
Prupe.5G121700 Prunus persica HOM05D003645 ORTHO05D004395 9.4e-16 88.2 68 60.3
CiPaw.12G081900 Carya illinoinensis HOM05D003645 ORTHO05D004395 1.6e-15 87.4 65 61.5
Sabra01G0066600 Salix brachista HOM05D003645 ORTHO05D004395 1.6e-15 87.4 68 57.4
Gohir.A02G099800 Gossypium hirsutum HOM05D003645 ORTHO05D004395 2.1e-15 87.0 71 64.8
QL02p030173 Quercus lobata HOM05D003645 ORTHO05D004395 2.1e-15 87.0 67 64.2
MD06G1108900 Malus domestica HOM05D003645 ORTHO05D004395 3.6e-15 86.3 68 57.4
Lj4g0007254 Lotus japonicus HOM05D003645 ORTHO05D004395 4.7e-15 85.9 68 60.3
Duzib205G1546 Durio zibethinus HOM05D003645 ORTHO05D004395 6.1e-15 85.5 63 66.7
Ca_17476_v3 Cicer arietinum L. HOM05D003645 ORTHO05D004395 8.0e-15 85.1 68 57.4
Potri.001G090400 Populus trichocarpa HOM05D003645 ORTHO05D004395 1.0e-14 84.7 62 62.9
Cc08_g16180 Coffea canephora HOM05D003645 ORTHO05D004395 1.8e-14 84.0 68 61.8
PGR042G2331 Punica granatum HOM05D003645 ORTHO05D004395 2.3e-14 83.6 71 57.7
Hma1.2p1_0440F.1_g153400 Hydrangea macrophylla HOM05D003645 ORTHO05D004395 3.0e-14 83.2 68 63.2
CSS0029909 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 4.0e-14 82.8 68 63.2
CSS0035334 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 4.0e-14 82.8 68 63.2
Migut.E01256 Erythranthe guttata HOM05D003645 ORTHO05D004395 4.0e-14 82.8 67 59.7
Oeu009968.1 Olea europaea HOM05D003645 ORTHO05D004395 4.0e-14 82.8 69 58.0
Ciclev10022256m.g Citrus clementina HOM05D003645 ORTHO05D004395 5.2e-14 82.4 242 29.8
Lalb_Chr09g0332361 Lupinus albus HOM05D003645 ORTHO05D004395 5.2e-14 82.4 68 58.8
Sc01g0010350 Simmondsia chinensis HOM05D003645 ORTHO05D004395 5.2e-14 82.4 67 64.2
TAR629G1680 Trochodendron aralioides HOM05D003645 ORTHO05D004395 6.8e-14 82.0 68 60.3
ClCG07G011530 Citrullus lanatus HOM05D003645 ORTHO05D004395 8.8e-14 81.6 68 58.8
Duzib068G0630 Durio zibethinus HOM05D003645 ORTHO05D004395 1.2e-13 81.3 63 61.9
Eucgr.D01751 Eucalyptus grandis HOM05D003645 ORTHO05D004395 1.2e-13 81.3 57 61.4
Medtr8g099560 Medicago truncatula HOM05D003645 ORTHO05D004395 1.2e-13 81.3 68 57.4
Rhsim07G0081700 Rhododendron simsii HOM05D003645 ORTHO05D004395 2.0e-13 80.5 51 70.6
Haze_09079 Corylus avellana HOM05D003645 ORTHO05D004395 2.6e-13 80.1 55 65.5
Haze_09080 Corylus avellana HOM05D003645 ORTHO05D004395 2.6e-13 80.1 55 65.5
MELO3C016302.2 Cucumis melo HOM05D003645 ORTHO05D004395 2.6e-13 80.1 68 61.8
Lalb_Chr05g0224071 Lupinus albus HOM05D003645 ORTHO05D004395 2.6e-13 80.1 68 58.8
Nn1g00238 Nelumbo nucifera HOM05D003645 ORTHO05D004395 2.6e-13 80.1 51 64.7
Nitab4.5_0001210g0150 Nicotiana tabacum HOM05D003645 ORTHO05D004395 3.4e-13 79.7 68 57.4
Nitab4.5_0006775g0010 Nicotiana tabacum HOM05D003645 ORTHO05D004395 3.4e-13 79.7 68 57.4
Peaxi162Scf00074g00076 Petunia axillaris HOM05D003645 ORTHO05D004395 3.4e-13 79.7 68 57.4
Psat7g024440 Pisum sativum HOM05D003645 ORTHO05D004395 3.4e-13 79.7 68 55.9
Potri.003G141200 Populus trichocarpa HOM05D003645 ORTHO05D004395 4.4e-13 79.3 242 29.3
Actinidia27314 Actinidia chinensis HOM05D003645 ORTHO05D004395 7.5e-13 78.6 68 60.3
MD14G1129800 Malus domestica HOM05D003645 ORTHO05D004395 7.5e-13 78.6 68 54.4
PGSC0003DMG400012142 Solanum tuberosum HOM05D003645 ORTHO05D004395 7.5e-13 78.6 70 55.7
Phvul.002G165000 Phaseolus vulgaris HOM05D003645 ORTHO05D004395 9.8e-13 78.2 62 56.5
Sabra03G0101700 Salix brachista HOM05D003645 ORTHO05D004395 9.8e-13 78.2 72 54.2
Sopen08g030720 Solanum pennellii HOM05D003645 ORTHO05D004395 9.8e-13 78.2 70 54.3
Solyc08g082470.1 Solanum lycopersicum HOM05D003645 ORTHO05D004395 1.3e-12 77.8 70 54.3
RcHm_v2.0_Chr7g0194471 Rosa chinensis HOM05D003645 ORTHO05D004395 1.7e-12 77.4 72 52.8
Glyma.01G226100 Glycine max HOM05D003645 ORTHO05D004395 2.2e-12 77.0 68 57.4
TPR.G37939 Trifolium pratense HOM05D003645 ORTHO05D004395 2.2e-12 77.0 51 62.7
Medtr5g009130 Medicago truncatula HOM05D003645 ORTHO05D004395 3.7e-12 76.3 51 62.7
arahy.Tifrunner.gnm1.ann1.QCE7ZS Arachis hypogaea HOM05D003645 ORTHO05D004395 4.9e-12 75.9 66 51.5
FAN04G0742 Fragaria x ananassa HOM05D003645 ORTHO05D004395 4.9e-12 75.9 72 51.4
SGA_v2.0_scaffold111G31406 Striga asiatica HOM05D003645 ORTHO05D004395 4.9e-12 75.9 67 55.2
TWI60G1019 Tripterygium wilfordii HOM05D003645 ORTHO05D004395 4.9e-12 75.9 67 55.2
Glyma.11G016700 Glycine max HOM05D003645 ORTHO05D004395 6.3e-12 75.5 62 58.1
Actinidia22734 Actinidia chinensis HOM05D003645 ORTHO05D004395 8.3e-12 75.1 68 55.9
TPR.G30941 Trifolium pratense HOM05D003645 ORTHO05D004395 1.1e-11 74.7 68 50.0
TWI15G0699 Tripterygium wilfordii HOM05D003645 ORTHO05D004395 1.1e-11 74.7 60 55.0
TAR636G1231 Trochodendron aralioides HOM05D003645 ORTHO05D004395 1.1e-11 74.7 67 55.2
SalBow6G5928 Salvia bowleyana HOM05D003645 ORTHO05D004395 1.8e-11 73.9 49 63.3
Ah.12g052620 Amaranthus hybridus HOM05D003645 ORTHO05D004395 2.4e-11 73.6 68 54.4
MD01G1044000 Malus domestica HOM05D003645 ORTHO05D004395 2.4e-11 73.6 68 52.9
Nn3g18992 Nelumbo nucifera HOM05D003645 ORTHO05D004395 2.4e-11 73.6 67 53.7
CAN.G1804.15 Capsicum annuum HOM05D003645 ORTHO05D004395 3.1e-11 73.2 70 51.4
Ca_24497_v3 Cicer arietinum L. HOM05D003645 ORTHO05D004395 3.1e-11 73.2 51 62.7
AUR62010853 Chenopodium quinoa HOM05D003645 ORTHO05D004395 4.1e-11 72.8 51 64.7
MBI06_g08483_MAGBIO Magnolia biondii HOM05D003645 ORTHO05D004395 4.1e-11 72.8 51 62.7
SalBow8G5128 Salvia bowleyana HOM05D003645 ORTHO05D004395 4.1e-11 72.8 49 61.2
CANSAT21G0134 Cannabis sativa HOM05D003645 ORTHO05D004395 5.4e-11 72.4 67 52.2
LjContig00222g0023656 Lotus japonicus HOM05D003645 ORTHO05D004395 7.0e-11 72.0 55 56.4
Sc23g0002090 Simmondsia chinensis HOM05D003645 ORTHO05D004395 9.2e-11 71.6 70 52.9
Lalb_Chr09g0320621 Lupinus albus HOM05D003645 ORTHO05D004395 1.6e-10 70.9 46 65.2
BcaNung01100 Brassica carinata HOM05D003645 ORTHO05D004395 2.7e-10 70.1 64 48.4
BcaNung04245 Brassica carinata HOM05D003645 ORTHO05D004395 2.7e-10 70.1 52 59.6
BcaNung04246 Brassica carinata HOM05D003645 ORTHO05D004395 2.7e-10 70.1 52 59.6
A03p54860 Brassica napus HOM05D003645 ORTHO05D004395 2.7e-10 70.1 52 59.6
C07p53240 Brassica napus HOM05D003645 ORTHO05D004395 2.7e-10 70.1 52 59.6
BolC7t45819H Brassica oleracea HOM05D003645 ORTHO05D004395 2.7e-10 70.1 52 59.6
BraA03t14553Z Brassica rapa HOM05D003645 ORTHO05D004395 2.7e-10 70.1 52 59.6
Cpa.g.sc79.18 Carica papaya HOM05D003645 ORTHO05D004395 2.7e-10 70.1 53 62.3
EL10Ac5g12927 Beta vulgaris HOM05D003645 ORTHO05D004395 3.5e-10 69.7 50 64.0
Lsat_1_v5_gn_6_83800 Lactuca sativa HOM05D003645 ORTHO05D004395 3.5e-10 69.7 51 58.8
Psat2g185920 Pisum sativum HOM05D003645 ORTHO05D004395 3.5e-10 69.7 47 61.7
Sp7g21900 Schrenkiella parvula HOM05D003645 ORTHO05D004395 5.9e-10 68.9 53 54.7
Aa31LG6G7170 Aethionema arabicum HOM05D003645 ORTHO05D004395 7.7e-10 68.6 64 48.4
C01p19170 Brassica napus HOM05D003645 ORTHO05D004395 7.7e-10 68.6 55 54.5
PSO761G0226 Papaver somniferum HOM05D003645 ORTHO05D004395 1.3e-09 67.8 62 56.5
BcaC09g50929 Brassica carinata HOM05D003645 ORTHO05D004395 1.7e-09 67.4 55 52.7
BolC1t01843H Brassica oleracea HOM05D003645 ORTHO05D004395 1.7e-09 67.4 55 52.7
BraA01t01462Z Brassica rapa HOM05D003645 ORTHO05D004395 1.7e-09 67.4 55 52.7
A01p15240 Brassica napus HOM05D003645 ORTHO05D004395 2.3e-09 67.0 55 52.7
FAN18G2610 Fragaria x ananassa HOM05D003645 ORTHO05D004395 2.3e-09 67.0 67 50.7
ATR0602G203 Amborella trichopoda HOM05D003645 ORTHO05D004395 2.9e-09 66.6 62 48.4
CSS0000881 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 2.9e-09 66.6 50 60.0
CDE10G0417 Ceratophyllum demersum HOM05D003645 ORTHO05D004395 3.8e-09 66.2 48 60.4
THA.LOC104806437 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 3.8e-09 66.2 60 48.3
Ah.05g179520 Amaranthus hybridus HOM05D003645 ORTHO05D004395 5.0e-09 65.9 67 47.8
Thhalv10026760m.g Eutrema salsugineum HOM05D003645 ORTHO05D004395 5.0e-09 65.9 51 54.9
CARHR231360 Cardamine hirsuta HOM05D003645 ORTHO05D004395 8.6e-09 65.1 52 53.8
AUR62023456 Chenopodium quinoa HOM05D003645 ORTHO05D004395 8.6e-09 65.1 59 50.8
PSO210G6387 Papaver somniferum HOM05D003645 ORTHO05D004395 1.1e-08 64.7 62 54.8
AT4G23930 Arabidopsis thaliana HOM05D003645 ORTHO05D004395 1.9e-08 63.9 56 50.0
DCAR_005391 Daucus carota HOM05D003645 ORTHO05D004395 2.5e-08 63.5 46 65.2
CiPaw.11G119800 Carya illinoinensis HOM05D003645 ORTHO05D004395 4.3e-08 62.8 61 50.8
AUR62004497 Chenopodium quinoa HOM05D003645 ORTHO05D004395 4.3e-08 62.8 67 47.8
MD11G1233400 Malus domestica HOM05D003645 ORTHO05D004395 4.3e-08 62.8 66 45.5
PSO135G0996 Papaver somniferum HOM05D003645 ORTHO05D004395 4.3e-08 62.8 48 58.3
PSO384G2325 Papaver somniferum HOM05D003645 ORTHO05D004395 4.3e-08 62.8 53 58.5
Cc02_g39420 Coffea canephora HOM05D003645 ORTHO05D004395 5.6e-08 62.4 49 59.2
SGA_v2.0_scaffold96G29020 Striga asiatica HOM05D003645 ORTHO05D004395 5.6e-08 62.4 62 43.5
Atru.chr9.1968 Acer truncatum HOM05D003645 ORTHO05D004395 7.3e-08 62.0 60 55.0
AL7G29380 Arabidopsis lyrata HOM05D003645 ORTHO05D004395 7.3e-08 62.0 49 53.1
Dinv38825 Davidia involucrata HOM05D003645 ORTHO05D004395 1.2e-07 61.2 57 50.9
Carub.0007s1715 Capsella rubella HOM05D003645 ORTHO05D004395 1.6e-07 60.8 62 45.2
ECA240G2545 Erigeron canadensis HOM05D003645 ORTHO05D004395 2.1e-07 60.5 48 54.2
DCAR_025255 Daucus carota HOM05D003645 ORTHO05D004395 3.6e-07 59.7 49 57.1
CsaV3_4G006680 Cucumis sativus L. HOM05D003645 ORTHO05D004395 4.7e-07 59.3 57 54.4
ECA240G4713 Erigeron canadensis HOM05D003645 ORTHO05D004395 4.7e-07 59.3 45 55.6
Nitab4.5_0013740g0010 Nicotiana tabacum HOM05D003645 ORTHO05D004395 6.1e-07 58.9 70 45.7
Lsat_1_v5_gn_4_33021 Lactuca sativa HOM05D003645 ORTHO05D004395 8.0e-07 58.5 49 53.1
Hma1.2p1_0139F.1_g063270 Hydrangea macrophylla HOM05D003645 ORTHO05D004395 1.0e-06 58.2 46 56.5
Zm00001eb350300 Zea mays HOM05D003645 ORTHO05D004395 1.0e-06 58.2 48 56.2
Os01g0234700 Oryza sativa ssp. japonica HOM05D003645 ORTHO05D004395 1.4e-06 57.8 46 63.0
Os05g0238400 Oryza sativa ssp. japonica HOM05D003645 ORTHO05D004395 1.4e-06 57.8 48 54.2
Sed0026909 Sechium edule HOM05D003645 ORTHO05D004395 1.4e-06 57.8 56 53.6
Rhsim01G0172700 Rhododendron simsii HOM05D003645 ORTHO05D004395 1.8e-06 57.4 47 53.2
FAN17G2464 Fragaria x ananassa HOM05D009879 ORTHO05D009647 2.3e-06 57.0 61 45.9
Solyc01g096000.2 Solanum lycopersicum HOM05D003645 ORTHO05D004395 2.3e-06 57.0 49 53.1
Sopen01g039720 Solanum pennellii HOM05D003645 ORTHO05D004395 2.3e-06 57.0 49 53.1
PGSC0003DMG400000115 Solanum tuberosum HOM05D003645 ORTHO05D004395 2.3e-06 57.0 49 53.1
MSTRG.17346 Avicennia marina HOM05D003645 ORTHO05D004395 3.0e-06 56.6 49 53.1
MD13G1190600 Malus domestica HOM05D003645 ORTHO05D004395 3.0e-06 56.6 71 45.1
CAN.G1415.29 Capsicum annuum HOM05D003645 ORTHO05D004395 5.2e-06 55.8 49 51.0


User provided reference genes

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