Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31441 Brassica carinata HOM05D001044 ORTHO05D008486 3.8e-83 311.6 175 100.0
BcaB07g31440 Brassica carinata HOM05D001044 ORTHO05D008486 2.1e-81 305.8 172 99.4
BcaC04g22536 Brassica carinata HOM05D001044 ORTHO05D008486 8.5e-75 283.9 177 89.8
C09p18060 Brassica napus HOM05D001044 ORTHO05D008486 8.5e-75 283.9 177 89.8
BolC9t54703H Brassica oleracea HOM05D001044 ORTHO05D008486 1.4e-72 276.6 180 87.8
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 2.2e-67 259.2 176 80.7
A09p14940 Brassica napus HOM05D001044 ORTHO05D008486 1.6e-57 226.5 177 75.1
BraA09t37139Z Brassica rapa HOM05D001044 ORTHO05D008486 7.5e-55 217.6 180 71.1
Sp2g00580 Schrenkiella parvula HOM05D001044 ORTHO05D008486 4.7e-49 198.4 194 68.6
AT1G64150 Arabidopsis thaliana HOM05D001044 ORTHO05D008486 2.0e-44 183.0 204 61.8
Thhalv10023558m.g Eutrema salsugineum HOM05D001044 ORTHO05D008486 4.5e-44 181.8 192 64.6
Carub.0002s0066 Capsella rubella HOM05D001044 ORTHO05D008486 1.2e-41 173.7 205 59.5
AL2G10880 Arabidopsis lyrata HOM05D001044 ORTHO05D008486 8.0e-41 171.0 202 59.4
BcaB06g26584 Brassica carinata HOM05D001044 ORTHO05D008486 1.2e-31 140.6 110 72.7
Aa31LG2G1200 Aethionema arabicum HOM05D001044 ORTHO05D008486 7.5e-31 137.9 143 64.3
THA.LOC104809353 Tarenaya hassleriana HOM05D001044 ORTHO05D008486 4.6e-20 102.1 153 52.3
Cfa012268 Carpinus fangiana HOM05D001044 ORTHO05D008486 3.7e-14 82.4 85 60.0
Prupe.5G110800 Prunus persica HOM05D001044 ORTHO05D008486 6.4e-14 81.6 113 46.0
Nitab4.5_0000966g0020 Nicotiana tabacum HOM05D001044 ORTHO05D008486 1.9e-13 80.1 137 42.3
Nitab4.5_0011409g0010 Nicotiana tabacum HOM05D001044 ORTHO05D008486 1.9e-13 80.1 144 43.1
QL02p032522 Quercus lobata HOM05D001044 ORTHO05D008486 1.9e-13 80.1 94 53.2
SGA_v2.0_scaffold163G37966 Striga asiatica HOM05D001044 ORTHO05D008486 2.4e-13 79.7 85 58.8
CiPaw.11G126800 Carya illinoinensis HOM05D001044 ORTHO05D008486 3.2e-13 79.3 122 45.9
MD06G1096200 Malus domestica HOM05D001044 ORTHO05D008486 4.1e-13 79.0 90 53.3
PGR031G0274 Punica granatum HOM05D001044 ORTHO05D008486 4.1e-13 79.0 85 60.0
Sabra03G0096700 Salix brachista HOM05D001044 ORTHO05D008486 5.4e-13 78.6 88 58.0
CANSAT35G0786 Cannabis sativa HOM05D001044 ORTHO05D008486 7.1e-13 78.2 89 55.1
AUR62010778 Chenopodium quinoa HOM05D001044 ORTHO05D008486 7.1e-13 78.2 91 52.7
AUR62019777 Chenopodium quinoa HOM05D001044 ORTHO05D008486 9.2e-13 77.8 91 52.7
Cc08_g15530 Coffea canephora HOM05D001044 ORTHO05D008486 1.2e-12 77.4 88 58.0
CAN.G532.67 Capsicum annuum HOM05D001044 ORTHO05D008486 1.6e-12 77.0 93 54.8
Potri.003G134300 Populus trichocarpa HOM05D001044 ORTHO05D008486 1.6e-12 77.0 88 56.8
PGSC0003DMG400012171 Solanum tuberosum HOM05D001044 ORTHO05D008486 1.6e-12 77.0 141 41.8
Hund14251 Selenicereus undatus HOM05D001044 ORTHO05D008486 2.1e-12 76.6 91 56.0
EL10Ac5g12855 Beta vulgaris HOM05D001044 ORTHO05D008486 2.7e-12 76.3 91 52.7
CsaV3_5G002250 Cucumis sativus L. HOM05D001044 ORTHO05D008486 2.7e-12 76.3 85 58.8
COL.COLO4_08333 Corchorus olitorius HOM05D001044 ORTHO05D008486 3.5e-12 75.9 88 52.3
FAN04G1718 Fragaria x ananassa HOM05D001044 ORTHO05D008486 3.5e-12 75.9 91 52.7
ClCG01G002130 Citrullus lanatus HOM05D001044 ORTHO05D008486 4.6e-12 75.5 84 58.3
RcHm_v2.0_Chr7g0196061 Rosa chinensis HOM05D001044 ORTHO05D008486 4.6e-12 75.5 83 56.6
Solyc08g081770.3 Solanum lycopersicum HOM05D001044 ORTHO05D008486 4.6e-12 75.5 141 42.6
Sopen08g030070 Solanum pennellii HOM05D001044 ORTHO05D008486 4.6e-12 75.5 144 41.7
Thecc.03G289400 Theobroma cacao HOM05D001044 ORTHO05D008486 4.6e-12 75.5 85 55.3
Cpa.g.sc321.3 Carica papaya HOM05D001044 ORTHO05D008486 1.0e-11 74.3 138 40.6
Peaxi162Scf00074g01514 Petunia axillaris HOM05D001044 ORTHO05D008486 1.0e-11 74.3 127 40.9
Phvul.002G161500 Phaseolus vulgaris HOM05D001044 ORTHO05D008486 1.0e-11 74.3 140 40.7
unitig_578.g16562 Utricularia gibba HOM05D001278 ORTHO05D001104 1.0e-11 74.3 93 52.7
PSO063G4777 Papaver somniferum HOM05D001044 ORTHO05D008486 1.7e-11 73.6 84 57.1
PSO170G5857 Papaver somniferum HOM05D001044 ORTHO05D008486 1.7e-11 73.6 84 57.1
Glyma.01G223500 Glycine max HOM05D001044 ORTHO05D008486 2.3e-11 73.2 98 48.0
Ciclev10020858m.g Citrus clementina HOM05D001044 ORTHO05D008486 3.0e-11 72.8 88 59.1
Dinv38884 Davidia involucrata HOM05D001044 ORTHO05D008486 3.0e-11 72.8 120 45.0
Lsat_1_v5_gn_3_9840 Lactuca sativa HOM05D001044 ORTHO05D008486 3.0e-11 72.8 88 53.4
Gohir.A12G232500 Gossypium hirsutum HOM05D001044 ORTHO05D008486 3.9e-11 72.4 84 54.8
Hma1.2p1_0216F.1_g091280 Hydrangea macrophylla HOM05D001044 ORTHO05D008486 3.9e-11 72.4 121 42.1
MBI06_g14407_MAGBIO Magnolia biondii HOM05D001044 ORTHO05D008486 3.9e-11 72.4 84 56.0
Atru.chr9.2079 Acer truncatum HOM05D001044 ORTHO05D008486 5.1e-11 72.0 83 59.0
MELO3C005729.2 Cucumis melo HOM05D001044 ORTHO05D008486 5.1e-11 72.0 114 49.1
Gorai.008G251200 Gossypium raimondii HOM05D001044 ORTHO05D008486 5.1e-11 72.0 84 54.8
FvH4_5g03670 Fragaria vesca HOM05D001044 ORTHO05D008486 6.6e-11 71.6 84 57.1
FAN18G2024 Fragaria x ananassa HOM05D001044 ORTHO05D008486 6.6e-11 71.6 84 57.1
Lalb_Chr09g0320731 Lupinus albus HOM05D001044 ORTHO05D008486 6.6e-11 71.6 98 45.9
Manes.02G014750 Manihot esculenta HOM05D001044 ORTHO05D008486 8.6e-11 71.2 84 54.8
Migut.E01805 Erythranthe guttata HOM05D001044 ORTHO05D008486 1.1e-10 70.9 92 51.1
Gohir.D12G234900 Gossypium hirsutum HOM05D001044 ORTHO05D008486 1.1e-10 70.9 84 53.6
Sed0026915 Sechium edule HOM05D001044 ORTHO05D008486 2.5e-10 69.7 72 61.1
Duzib205G1268 Durio zibethinus HOM05D001044 ORTHO05D008486 3.3e-10 69.3 85 52.9
FAN13G0499 Fragaria x ananassa HOM05D001044 ORTHO05D008486 4.3e-10 68.9 82 56.1
FAN13G2515 Fragaria x ananassa HOM05D001044 ORTHO05D008486 4.3e-10 68.9 82 56.1
Medtr5g009810 Medicago truncatula HOM05D001044 ORTHO05D008486 4.3e-10 68.9 117 45.3
TWI60G0564 Tripterygium wilfordii HOM05D001044 ORTHO05D008486 4.3e-10 68.9 89 48.3
GSVIVG01019449001 Vitis vinifera HOM05D001044 ORTHO05D008486 4.3e-10 68.9 85 56.5
Aqoxy5G04043 Aquilegia oxysepala HOM05D001044 ORTHO05D008486 5.6e-10 68.6 84 53.6
FAN04G0603 Fragaria x ananassa HOM05D001044 ORTHO05D008486 5.6e-10 68.6 87 50.6
Rhsim02G0237500 Rhododendron simsii HOM05D001044 ORTHO05D008486 5.6e-10 68.6 84 56.0
vmacro11419 Vaccinium macrocarpon HOM05D001044 ORTHO05D008486 5.6e-10 68.6 84 54.8
CSS0027074 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D008486 7.3e-10 68.2 89 50.6
Eucgr.D01791 Eucalyptus grandis HOM05D001044 ORTHO05D008486 9.6e-10 67.8 87 54.0
HanXRQChr17g0533941 Helianthus annuus HOM05D001044 ORTHO05D008486 9.6e-10 67.8 87 50.6
LjContig00312_ERROPOS870357g0011954 Lotus japonicus HOM05D001044 ORTHO05D008486 9.6e-10 67.8 92 48.9
Os01g0221700 Oryza sativa ssp. japonica HOM05D001044 ORTHO05D008486 9.6e-10 67.8 85 50.6
TAR629G0277 Trochodendron aralioides HOM05D001044 ORTHO05D008486 9.6e-10 67.8 81 55.6
CDE08G1610 Ceratophyllum demersum HOM05D001044 ORTHO05D008486 1.2e-09 67.4 125 40.0
Glyma.11G020001 Glycine max HOM05D001044 ORTHO05D008486 1.2e-09 67.4 80 52.5
VMungo1215G2119 Vigna mungo HOM05D001044 ORTHO05D008486 1.2e-09 67.4 91 49.5
arahy.Tifrunner.gnm1.ann1.U47N90 Arachis hypogaea HOM05D001044 ORTHO05D008486 4.7e-09 65.5 138 41.3
Nn1g01757 Nelumbo nucifera HOM05D001044 ORTHO05D008486 4.7e-09 65.5 84 52.4
Psat2g184200 Pisum sativum HOM05D001044 ORTHO05D008486 8.1e-09 64.7 50 70.0
CARHR046790 Cardamine hirsuta HOM05D001044 ORTHO05D008486 1.1e-08 64.3 44 75.0
Sc01g0009990 Simmondsia chinensis HOM05D001044 ORTHO05D008486 1.4e-08 63.9 49 73.5
Zm00001eb338890 Zea mays HOM05D001044 ORTHO05D008486 1.4e-08 63.9 89 47.2
DCAR_008527 Daucus carota HOM05D001044 ORTHO05D008486 1.8e-08 63.5 87 48.3
Mapoly0032s0011 Marchantia polymorpha HOM05D001044 ORTHO05D008486 2.4e-08 63.2 88 44.3
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 2.4e-08 63.2 140 36.4
arahy.Tifrunner.gnm1.ann1.FZ52LJ Arachis hypogaea HOM05D001044 ORTHO05D008486 3.1e-08 62.8 92 47.8
Pp3c2_28570 Physcomitrium patens HOM05D001044 ORTHO05D008486 1.3e-06 57.4 86 47.7
Actinidia04223 Actinidia chinensis HOM05D001044 ORTHO05D008486 3.8e-06 55.8 94 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1872 Anthoceros agrestis HOM05D001044 ORTHO05D008486 6.4e-06 55.1 45 62.2
Haze_08717 Corylus avellana HOM05D001044 ORTHO05D008486 6.4e-06 55.1 80 47.5


User provided reference genes

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