Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31428 Brassica carinata HOM05D006267 ORTHO05D007490 0.0e+00 1205.3 660 100.0
BraA09t37153Z Brassica rapa HOM05D006267 ORTHO05D007490 8.2e-296 1020.0 666 86.3
A09p15090 Brassica napus HOM05D006267 ORTHO05D007490 6.9e-295 1016.9 666 86.3
BolC9t54717H Brassica oleracea HOM05D006267 ORTHO05D007490 5.5e-284 980.7 670 84.2
BcaC04g22526 Brassica carinata HOM05D006267 ORTHO05D007490 6.1e-283 977.2 670 83.9
C09p18210 Brassica napus HOM05D006267 ORTHO05D007490 1.0e-282 976.5 670 84.0
Sp2g00660 Schrenkiella parvula HOM05D006267 ORTHO05D007490 3.0e-258 895.2 662 80.7
Thhalv10023327m.g Eutrema salsugineum HOM05D006267 ORTHO05D007490 1.2e-249 866.7 677 78.0
AL2G11010 Arabidopsis lyrata HOM05D006267 ORTHO05D007490 2.9e-232 808.9 678 73.5
CARHR046900 Cardamine hirsuta HOM05D006267 ORTHO05D007490 9.2e-231 803.9 680 69.0
Carub.0002s0075 Capsella rubella HOM05D006267 ORTHO05D007490 2.0e-225 786.2 676 70.0
AT1G64050 Arabidopsis thaliana HOM05D006267 ORTHO05D007490 3.7e-224 781.9 678 70.4
Aa31LG2G1120 Aethionema arabicum HOM05D006267 ORTHO05D007490 7.7e-169 598.2 570 63.5
THA.LOC104817764 Tarenaya hassleriana HOM05D006267 ORTHO05D007490 3.3e-164 582.8 624 58.7
Cpa.g.sc201.8 Carica papaya HOM05D006267 ORTHO05D007490 1.7e-83 314.7 631 38.2
Thecc.03G287200 Theobroma cacao HOM05D006267 ORTHO05D007490 5.6e-79 299.7 639 37.1
COL.COLO4_08352 Corchorus olitorius HOM05D006267 ORTHO05D007490 3.1e-77 293.9 636 37.3
Atru.chr9.2105 Acer truncatum HOM05D006267 ORTHO05D007490 4.0e-77 293.5 638 39.3
Duzib084G0031 Durio zibethinus HOM05D006267 ORTHO05D007490 9.9e-76 288.9 620 38.4
GSVIVG01019426001 Vitis vinifera HOM05D006267 ORTHO05D007490 2.1e-73 281.2 609 37.4
Duzib205G1874 Durio zibethinus HOM05D006267 ORTHO05D007490 1.5e-71 275.0 630 36.0
Prupe.5G107200 Prunus persica HOM05D006267 ORTHO05D007490 4.8e-70 270.0 465 41.1
Ciclev10019222m.g Citrus clementina HOM05D006267 ORTHO05D007490 9.0e-69 265.8 629 37.0
QL02p033236 Quercus lobata HOM05D006267 ORTHO05D007490 7.6e-68 262.7 582 37.1
CANSAT21G1484 Cannabis sativa HOM05D006267 ORTHO05D007490 1.1e-66 258.8 622 36.2
MD14G1113000 Malus domestica HOM05D006267 ORTHO05D007490 3.2e-66 257.3 583 35.8
Gohir.A11G023100 Gossypium hirsutum HOM05D006267 ORTHO05D007490 4.6e-65 253.4 529 39.1
Gorai.007G024600 Gossypium raimondii HOM05D006267 ORTHO05D007490 1.8e-64 251.5 529 39.1
ClCG07G007820 Citrullus lanatus HOM05D006267 ORTHO05D007490 3.0e-64 250.8 641 35.4
MD06G1092500 Malus domestica HOM05D006267 ORTHO05D007490 3.9e-64 250.4 589 35.3
Gohir.D11G022800 Gossypium hirsutum HOM05D006267 ORTHO05D007490 1.1e-63 248.8 529 38.9
CSS0029775 Camellia sinensis var. sinensis HOM05D006267 ORTHO05D007490 1.9e-63 248.1 572 35.3
Dinv37589 Davidia involucrata HOM05D006267 ORTHO05D007490 4.8e-62 243.4 657 33.0
FvH4_5g03290 Fragaria vesca HOM05D006267 ORTHO05D007490 8.2e-62 242.7 593 36.6
FAN18G3550 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.8e-61 241.5 582 36.4
Glyma.08G018700 Glycine max HOM05D006267 ORTHO05D007490 2.4e-61 241.1 490 37.6
Dinv38895 Davidia involucrata HOM05D006267 ORTHO05D007490 3.4e-60 237.3 519 35.5
Ca_10954_v3 Cicer arietinum L. HOM05D006267 ORTHO05D007490 5.9e-60 236.5 534 36.0
CsaV3_4G006140 Cucumis sativus L. HOM05D006267 ORTHO05D007490 1.1e-58 232.3 537 36.3
Potri.001G098500 Populus trichocarpa HOM05D006267 ORTHO05D007490 1.1e-58 232.3 593 34.1
Phvul.002G293500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 7.2e-58 229.6 520 35.8
TPR.G12935 Trifolium pratense HOM05D006267 ORTHO05D007490 2.7e-57 227.6 649 32.5
Eucgr.E00783 Eucalyptus grandis HOM05D006267 ORTHO05D007490 3.6e-57 227.3 625 36.2
FAN04G2714 Fragaria x ananassa HOM05D006267 ORTHO05D007490 4.6e-57 226.9 541 37.0
Actinidia27358 Actinidia chinensis HOM05D006267 ORTHO05D007490 1.0e-56 225.7 583 34.0
RcHm_v2.0_Chr7g0196491 Rosa chinensis HOM05D006267 ORTHO05D007490 1.8e-56 224.9 593 36.1
Cfa012253 Carpinus fangiana HOM05D006267 ORTHO05D007490 2.3e-56 224.6 674 33.1
CiPaw.12G088700 Carya illinoinensis HOM05D006267 ORTHO05D007490 3.0e-56 224.2 570 35.3
FAN08G1104 Fragaria x ananassa HOM05D006267 ORTHO05D007490 3.9e-56 223.8 615 34.5
arahy.Tifrunner.gnm1.ann1.SWZD22 Arachis hypogaea HOM05D006267 ORTHO05D007490 1.1e-55 222.2 543 33.5
Manes.02G016400 Manihot esculenta HOM05D006267 ORTHO05D007490 1.1e-55 222.2 428 37.6
Psat7g029320 Pisum sativum HOM05D006267 ORTHO05D007490 2.0e-55 221.5 531 33.7
Medtr8g098995 Medicago truncatula HOM05D006267 ORTHO05D007490 3.3e-55 220.7 575 34.3
arahy.Tifrunner.gnm1.ann1.BRCM5A Arachis hypogaea HOM05D006267 ORTHO05D007490 5.7e-55 219.9 650 31.7
Lalb_Chr09g0333071 Lupinus albus HOM05D006267 ORTHO05D007490 9.7e-55 219.2 576 33.7
Glyma.05G212200 Glycine max HOM05D006267 ORTHO05D007490 1.3e-54 218.8 537 35.0
Lj4g0011337 Lotus japonicus HOM05D006267 ORTHO05D007490 1.3e-54 218.8 625 33.0
Manes.01G056900 Manihot esculenta HOM05D006267 ORTHO05D007490 1.3e-54 218.8 567 35.1
VMungo0251G1048 Vigna mungo HOM05D006267 ORTHO05D007490 1.3e-54 218.8 648 32.3
MELO3C016335.2 Cucumis melo HOM05D006267 ORTHO05D007490 1.7e-54 218.4 643 34.4
Sed0011828 Sechium edule HOM05D006267 ORTHO05D007490 8.2e-54 216.1 529 34.6
Actinidia33723 Actinidia chinensis HOM05D006267 ORTHO05D007490 1.1e-53 215.7 601 32.9
FAN04G3088 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.4e-53 215.3 565 34.9
Lalb_Chr05g0224451 Lupinus albus HOM05D006267 ORTHO05D007490 1.4e-53 215.3 611 32.2
Sabra03G0095400 Salix brachista HOM05D006267 ORTHO05D007490 5.3e-53 213.4 653 32.3
AUR62010761 Chenopodium quinoa HOM05D006267 ORTHO05D007490 1.5e-52 211.8 627 32.1
Hma1.2p1_0216F.1_g091140 Hydrangea macrophylla HOM05D006267 ORTHO05D007490 2.0e-52 211.5 467 36.8
TWI60G1512 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 2.6e-52 211.1 364 41.5
TAR629G1352 Trochodendron aralioides HOM05D006267 ORTHO05D007490 7.7e-52 209.5 639 32.9
FAN13G1859 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.0e-51 209.1 623 34.3
Potri.003G133100 Populus trichocarpa HOM05D006267 ORTHO05D007490 1.0e-51 209.1 639 31.8
Sabra01G0073800 Salix brachista HOM05D006267 ORTHO05D007490 2.9e-51 207.6 629 31.6
Duzib068G0865 Durio zibethinus HOM05D006267 ORTHO05D007490 1.1e-50 205.7 642 33.0
AUR62019762 Chenopodium quinoa HOM05D006267 ORTHO05D007490 2.7e-49 201.1 622 30.9
Nitab4.5_0002381g0070 Nicotiana tabacum HOM05D006267 ORTHO05D007490 4.7e-49 200.3 552 33.7
Sc01g0009910 Simmondsia chinensis HOM05D006267 ORTHO05D007490 7.9e-49 199.5 625 29.9
EL10Ac5g12844 Beta vulgaris HOM05D006267 ORTHO05D007490 1.8e-48 198.4 609 31.2
FAN13G1356 Fragaria x ananassa HOM05D006267 ORTHO05D007490 2.3e-48 198.0 618 34.0
Lj2A177G41 Lonicera japonica HOM05D006267 ORTHO05D007490 3.0e-48 197.6 629 32.8
Hund11430 Selenicereus undatus HOM05D006267 ORTHO05D007490 3.9e-48 197.2 411 35.5
Peaxi162Scf00117g01519 Petunia axillaris HOM05D006267 ORTHO05D007490 5.1e-48 196.8 560 34.8
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.1e-47 195.7 573 33.0
TWI15G0222 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 3.3e-47 194.1 364 38.2
Sed0002932 Sechium edule HOM05D006267 ORTHO05D007490 4.4e-47 193.7 470 34.3
Phvul.002G160500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 2.2e-46 191.4 522 32.8
PGR042G1146 Punica granatum HOM05D006267 ORTHO05D007490 2.2e-46 191.4 574 32.4
Nn1g01698 Nelumbo nucifera HOM05D006267 ORTHO05D007490 4.8e-46 190.3 614 32.9
Migut.E01211 Erythranthe guttata HOM05D006267 ORTHO05D007490 6.3e-46 189.9 566 30.9
Lsat_1_v5_gn_3_11600 Lactuca sativa HOM05D006267 ORTHO05D007490 8.2e-46 189.5 557 32.3
TWI81G0535 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 8.2e-46 189.5 410 36.3
VMungo1215G1298 Vigna mungo HOM05D006267 ORTHO05D007490 1.8e-45 188.3 520 32.9
Nitab4.5_0003366g0020 Nicotiana tabacum HOM05D006267 ORTHO05D007490 7.0e-45 186.4 557 33.0
Cc08_g15330 Coffea canephora HOM05D006267 ORTHO05D007490 1.5e-44 185.3 405 34.3
HanXRQChr17g0533871 Helianthus annuus HOM05D006267 ORTHO05D007490 4.5e-44 183.7 597 31.3
Rhsim07G0086900 Rhododendron simsii HOM05D006267 ORTHO05D007490 7.7e-44 183.0 484 33.3
Solyc12g056170.2 Solanum lycopersicum HOM05D006267 ORTHO05D007490 7.7e-44 183.0 554 33.2
Sopen12g028680 Solanum pennellii HOM05D006267 ORTHO05D007490 5.0e-43 180.3 551 33.2
TAR374G1011 Trochodendron aralioides HOM05D006267 ORTHO05D007490 6.5e-43 179.9 597 30.5
TAR375G0718 Trochodendron aralioides HOM05D006267 ORTHO05D007490 1.6e-41 175.3 500 31.2
DCAR_005575 Daucus carota HOM05D006267 ORTHO05D007490 1.0e-40 172.6 508 30.1
PGSC0003DMG400004984 Solanum tuberosum HOM05D006267 ORTHO05D007490 1.0e-40 172.6 598 31.8
MSTRG.13864 Avicennia marina HOM05D006267 ORTHO05D007490 1.4e-40 172.2 402 35.1
SGA_v2.0_scaffold111G31467 Striga asiatica HOM05D006267 ORTHO05D007490 4.4e-39 167.2 458 34.1
ECA246G3109 Erigeron canadensis HOM05D006267 ORTHO05D007490 3.1e-37 161.0 539 31.7
Haze_08744 Corylus avellana HOM05D006267 ORTHO05D007490 2.6e-36 157.9 311 37.9
PSO063G3925 Papaver somniferum HOM05D006267 ORTHO05D007490 2.7e-33 147.9 570 30.4
vmacro13979 Vaccinium macrocarpon HOM05D006267 ORTHO05D007490 1.4e-32 145.6 570 28.8
PSO170G4156 Papaver somniferum HOM05D006267 ORTHO05D007490 1.8e-32 145.2 570 30.0
MSTRG.1836 Avicennia marina HOM05D006267 ORTHO05D007490 9.7e-31 139.4 572 30.8
Aqoxy7G00177 Aquilegia oxysepala HOM05D006267 ORTHO05D007490 1.7e-30 138.7 510 30.8
MBI04_g06288_MAGBIO Magnolia biondii HOM05D006267 ORTHO05D007490 1.4e-29 135.6 299 34.1
SHI07081 Sapria himalayana HOM05D006267 ORTHO05D007490 6.3e-22 110.2 441 27.9
unitig_52.g17233 Utricularia gibba HOM05D006267 ORTHO05D007490 5.0e-19 100.5 248 32.7
ATR0188G022 Amborella trichopoda HOM05D006267 ORTHO05D007490 8.6e-19 99.8 284 32.7
Zm00001eb237760 Zea mays HOM05D006267 ORTHO05D007490 9.8e-15 86.3 434 25.1
HPP92_003940 Vanilla planifolia HOM05D006267 ORTHO05D007490 2.8e-14 84.7 309 24.3
HanXRQChr06g0166231 Helianthus annuus HOM05D006267 ORTHO05D007490 1.8e-13 82.0 257 29.6
CiPaw.11G129100 Carya illinoinensis HOM05D006267 ORTHO05D007490 2.3e-08 65.1 146 33.6


User provided reference genes

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