Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 8.1e-109 397.5 268 100.0
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 1.2e-104 383.6 268 89.6
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 1.2e-104 383.6 268 89.6
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 2.5e-102 375.9 269 82.9
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 2.5e-102 375.9 269 88.1
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 2.5e-102 375.9 269 88.1
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 2.8e-85 319.3 275 78.9
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 9.0e-76 287.7 285 66.7
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 1.3e-71 273.9 271 72.7
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 5.6e-70 268.5 271 70.5
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 1.1e-68 264.2 279 58.1
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 3.7e-61 239.2 266 63.2
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 4.1e-60 235.7 283 59.0
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 4.1e-36 156.0 279 50.5
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 3.5e-35 152.9 247 53.4
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 1.6e-32 144.1 204 44.1
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 1.2e-30 137.9 298 38.3
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 3.4e-30 136.3 271 38.7
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 5.7e-30 135.6 271 38.4
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 5.7e-30 135.6 301 40.9
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 7.5e-30 135.2 271 39.5
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 9.7e-30 134.8 278 40.3
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 1.7e-29 134.0 296 39.5
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 2.8e-29 133.3 282 40.4
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.1e-28 131.3 305 39.7
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 1.1e-28 131.3 249 44.6
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 1.4e-28 131.0 201 51.2
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 1.8e-28 130.6 277 42.6
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 2.4e-28 130.2 246 45.1
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 2.4e-28 130.2 328 39.0
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.1e-28 129.8 293 40.3
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 3.1e-28 129.8 259 43.2
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 4.1e-28 129.4 335 34.3
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 4.1e-28 129.4 360 36.1
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 9.1e-28 128.3 287 41.1
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 9.1e-28 128.3 287 41.1
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 2.7e-27 126.7 326 40.2
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 4.5e-27 125.9 291 39.9
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 4.5e-27 125.9 261 41.0
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 4.5e-27 125.9 287 37.3
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 5.9e-27 125.6 197 52.3
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 5.9e-27 125.6 273 33.7
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 5.9e-27 125.6 338 38.5
BcaB07g31547 Brassica carinata HOM05D007467 ORTHO05D009441 1.0e-26 124.8 222 42.8
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 1.3e-26 124.4 334 37.4
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 5.0e-26 122.5 236 44.5
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 6.5e-26 122.1 309 39.5
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.1e-25 121.3 260 42.7
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 1.1e-25 121.3 322 37.6
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 2.5e-25 120.2 298 39.9
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 2.5e-25 120.2 261 33.7
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 4.2e-25 119.4 242 43.4
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 9.4e-25 118.2 292 32.5
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 9.4e-25 118.2 366 34.7
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 1.6e-24 117.5 240 42.1
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 3.6e-24 116.3 242 42.6
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 6.1e-24 115.5 235 44.3
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 8.0e-24 115.2 266 39.5
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 1.0e-23 114.8 265 42.6
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 1.4e-23 114.4 335 35.8
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 1.8e-23 114.0 310 40.6
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.3e-23 113.6 266 39.1
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 4.0e-23 112.8 201 36.8
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 4.0e-23 112.8 201 36.8
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 6.8e-23 112.1 245 40.0
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 8.8e-23 111.7 315 36.8
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 1.2e-22 111.3 265 38.5
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 2.6e-22 110.2 239 40.6
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 2.6e-22 110.2 328 36.9
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 3.4e-22 109.8 299 32.1
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 1.7e-21 107.5 246 42.3
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 2.8e-21 106.7 283 39.2
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 8.3e-21 105.1 320 37.5
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 5.4e-20 102.4 331 34.1
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 7.0e-20 102.1 287 41.1
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 1.6e-19 100.9 383 32.6
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 2.7e-19 100.1 332 30.4
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 5.0e-18 95.9 253 39.5
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 4.7e-16 89.4 204 41.7
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 6.1e-16 89.0 302 36.4
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 2.3e-15 87.0 279 35.1
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 5.2e-15 85.9 296 34.1
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 8.3e-13 78.6 51 68.6
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.4e-12 77.8 241 36.9
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 1.4e-12 77.8 125 42.4
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 1.8e-12 77.4 276 34.4
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 2.0e-11 73.9 243 35.4
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 3.5e-11 73.2 284 26.1
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 3.5e-11 73.2 241 36.1
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 5.9e-11 72.4 280 34.3
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 1.3e-10 71.2 215 34.4
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 2.9e-10 70.1 72 54.2
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 8.0e-08 62.0 231 26.0
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 3.1e-07 60.1 234 24.4
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 8.9e-07 58.5 61 47.5
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 1.5e-06 57.8 240 28.3


User provided reference genes

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