Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 2.7e-225 785.0 397 100.0
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 2.0e-212 742.3 397 95.7
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 4.9e-211 737.6 397 95.2
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 8.6e-208 726.9 398 94.5
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.6e-206 722.6 398 94.0
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.6e-206 722.6 398 94.0
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.4e-204 714.9 399 91.2
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 7.0e-202 707.2 406 89.2
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 8.9e-197 690.3 406 87.4
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.3e-195 686.4 402 86.6
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 2.9e-195 685.3 406 86.5
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 3.1e-189 665.2 385 88.6
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.1e-186 656.8 404 80.7
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 2.8e-182 642.1 406 81.8
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 3.8e-179 631.7 406 77.3
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.2e-177 626.7 406 81.0
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 6.0e-177 624.4 428 77.1
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.0e-176 622.1 400 78.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 8.7e-176 620.5 400 78.0
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.4e-173 613.2 400 77.0
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.8e-173 612.8 400 77.2
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 2.0e-172 609.4 426 73.7
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 3.4e-172 608.6 396 75.8
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 4.5e-172 608.2 404 76.5
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.3e-171 606.7 396 75.3
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 3.8e-171 605.1 395 76.7
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 3.8e-171 605.1 400 75.8
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.4e-170 603.2 399 75.2
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.4e-170 603.2 395 75.7
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 9.3e-170 600.5 403 73.7
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.2e-169 600.1 395 75.7
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 6.0e-169 597.8 403 73.4
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.0e-168 597.0 399 75.2
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.0e-168 597.0 395 74.9
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 2.3e-168 595.9 398 74.4
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 3.9e-168 595.1 403 73.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 7.4e-167 590.9 402 72.9
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.6e-166 589.7 404 72.5
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.6e-166 589.7 339 85.0
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.6e-166 589.7 395 74.7
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.6e-166 589.7 411 72.0
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.8e-166 589.0 398 73.4
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 4.8e-166 588.2 398 74.1
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 6.2e-166 587.8 398 73.1
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 3.1e-165 585.5 394 75.1
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 3.1e-165 585.5 359 79.1
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 5.3e-165 584.7 396 73.0
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 5.3e-165 584.7 401 73.8
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 6.9e-165 584.3 314 92.0
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 2.0e-164 582.8 393 74.0
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 5.8e-164 581.3 396 73.2
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 2.9e-163 578.9 395 72.2
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 4.9e-163 578.2 399 72.7
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.1e-162 577.0 399 70.9
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 1.4e-162 576.6 417 70.5
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 2.5e-162 575.9 357 77.3
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 3.2e-162 575.5 361 78.4
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 4.2e-162 575.1 405 72.1
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 7.1e-162 574.3 402 71.9
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 7.1e-162 574.3 395 70.6
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.2e-161 573.5 366 76.5
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 2.1e-161 572.8 398 72.1
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 2.1e-161 572.8 411 70.1
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 2.7e-161 572.4 399 72.2
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 3.5e-161 572.0 405 72.8
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 6.0e-161 571.2 395 71.9
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.3e-160 570.1 401 71.8
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.3e-160 570.1 400 70.8
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.3e-160 570.1 398 70.9
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 3.0e-160 568.9 398 70.6
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 3.9e-160 568.5 394 72.6
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 3.9e-160 568.5 404 71.5
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 5.1e-160 568.2 402 72.1
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 6.7e-160 567.8 395 71.4
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 6.7e-160 567.8 398 72.1
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 8.7e-160 567.4 404 71.8
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.5e-159 566.6 397 70.5
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.9e-159 566.2 370 73.8
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.9e-159 566.2 401 70.6
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.5e-159 565.8 404 71.0
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 5.6e-159 564.7 402 70.4
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 7.4e-159 564.3 408 71.1
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 9.6e-159 563.9 417 68.1
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 4.8e-158 561.6 420 66.9
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 4.8e-158 561.6 379 72.0
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.4e-157 560.1 376 73.7
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.3e-155 553.5 380 72.6
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 9.3e-154 547.4 396 69.4
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 9.3e-154 547.4 353 76.2
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.6e-153 546.6 399 66.7
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.7e-153 545.8 381 71.7
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.0e-152 543.9 373 72.7
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.3e-152 542.7 433 64.9
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.1e-151 540.4 327 79.2
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.5e-151 540.0 347 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 6.3e-150 534.6 373 72.1
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 6.3e-150 534.6 371 71.4
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 8.2e-150 534.3 397 67.8
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 2.0e-148 529.6 404 68.1
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 5.9e-148 528.1 344 73.3
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.7e-147 526.6 357 73.1
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 8.5e-147 524.2 397 68.0
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.9e-146 523.1 357 72.8
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.9e-146 523.1 314 79.6
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.7e-145 519.2 353 71.1
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 3.6e-145 518.8 420 65.0
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.2e-142 509.6 353 72.0
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 2.8e-142 509.2 376 68.1
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 2.8e-142 509.2 345 71.6
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.4e-141 506.1 353 69.1
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 9.1e-141 504.2 313 83.1
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 2.9e-139 499.2 464 59.3
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 5.5e-138 495.0 353 70.0
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 5.7e-135 485.0 573 48.5
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.7e-134 483.4 401 64.1
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 2.9e-131 472.6 379 62.3
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.4e-128 463.8 292 78.4
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.7e-126 456.8 346 64.7
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.2e-111 407.5 361 60.4
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.0e-71 273.9 194 72.2
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.4e-69 267.7 147 83.0
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 6.6e-67 258.8 373 43.2
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 5.1e-59 232.6 216 55.6
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 1.6e-57 227.6 329 45.3
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 2.0e-55 220.7 145 74.5
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 1.2e-52 211.5 190 62.6
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 5.1e-43 179.5 112 78.6
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 6.1e-36 156.0 112 69.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.8e-33 147.1 81 79.0
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.3e-30 138.3 375 28.3
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.4e-27 128.3 91 68.1
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 3.7e-25 120.2 80 67.5
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 6.1e-20 102.8 53 90.6
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 7.5e-10 69.3 45 68.9
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 9.7e-10 68.9 95 44.2
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 1.8e-08 64.7 73 45.2


User provided reference genes

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