Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 2.3e-119 432.2 205 100.0
A09p15620 Brassica napus HOM05D007210 ORTHO05D006152 1.9e-86 322.8 180 83.3
BcaC04g22476 Brassica carinata HOM05D007210 ORTHO05D006152 2.6e-75 285.8 162 81.5
BolC9t54788H Brassica oleracea HOM05D007210 ORTHO05D006152 2.6e-75 285.8 162 81.5
BraA09t37202Z Brassica rapa HOM05D007210 ORTHO05D006152 3.8e-74 282.0 162 82.1
BcaB07g31391 Brassica carinata HOM05D007210 ORTHO05D006152 3.4e-59 232.3 160 74.4
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 5.1e-47 191.8 186 50.0
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 2.2e-45 186.4 191 47.1
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 2.4e-44 183.0 180 48.3
C09p18860 Brassica napus HOM05D007210 ORTHO05D006152 4.1e-44 182.2 162 58.6
CARHR284440 Cardamine hirsuta HOM05D007210 ORTHO05D006152 5.0e-42 175.3 164 53.7
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 3.9e-39 165.6 173 46.2
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.1e-36 156.0 149 49.7
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.5e-33 147.1 171 49.7
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 8.0e-32 141.4 172 46.5
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 8.2e-29 131.3 168 46.4
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 1.4e-28 130.6 168 45.8
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.1e-28 129.4 172 43.0
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 9.1e-28 127.9 155 49.7
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.6e-27 127.1 173 42.8
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 1.3e-26 124.0 198 42.4
Thhalv10024042m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 2.5e-25 119.8 185 39.5
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.6e-24 115.9 159 44.0
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 8.0e-24 114.8 151 44.4
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.0e-23 114.4 154 42.9
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 1.0e-23 114.4 182 38.5
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 1.8e-23 113.6 192 33.9
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 2.3e-23 113.2 185 37.8
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.0e-23 112.8 171 39.8
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 4.0e-23 112.5 185 40.0
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 4.0e-23 112.5 153 41.8
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 8.8e-23 111.3 167 40.1
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 1.5e-22 110.5 141 43.3
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 2.0e-22 110.2 187 36.4
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 2.6e-22 109.8 186 39.8
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 4.4e-22 109.0 139 47.5
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 4.4e-22 109.0 151 39.1
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 7.5e-22 108.2 176 37.5
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 1.3e-21 107.5 139 43.2
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 1.3e-21 107.5 156 41.0
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 1.7e-21 107.1 167 37.7
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 2.2e-21 106.7 189 36.5
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.7e-21 105.9 173 37.0
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 3.7e-21 105.9 157 40.1
AL2G12200 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.8e-21 105.5 104 47.1
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 4.8e-21 105.5 156 40.4
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 8.3e-21 104.8 189 37.6
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 1.4e-20 104.0 156 39.7
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 2.4e-20 103.2 194 36.1
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.4e-20 102.1 174 36.8
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 5.4e-20 102.1 156 40.4
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 5.4e-20 102.1 161 34.8
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 5.4e-20 102.1 156 40.4
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 5.4e-20 102.1 189 37.6
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 1.2e-19 100.9 191 34.0
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 1.6e-19 100.5 156 39.7
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 2.0e-19 100.1 165 38.2
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.5e-19 99.0 157 38.9
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 7.7e-19 98.2 196 35.7
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 7.7e-19 98.2 196 35.7
A03p13090 Brassica napus HOM05D007210 ORTHO05D006152 1.0e-18 97.8 149 38.9
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.3e-18 97.4 147 40.8
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 1.3e-18 97.4 149 38.3
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 1.3e-18 97.4 149 38.3
BolC3t13971H Brassica oleracea HOM05D007210 ORTHO05D006152 3.8e-18 95.9 149 38.3
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 5.0e-18 95.5 156 39.1
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 3.2e-17 92.8 153 32.7
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 3.2e-17 92.8 119 42.0
CARHR048290 Cardamine hirsuta HOM05D007210 ORTHO05D006152 2.1e-16 90.1 183 33.9
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 2.8e-16 89.7 117 44.4
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 3.0e-15 86.3 225 30.7
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 6.8e-15 85.1 155 37.4
A10p14190 Brassica napus HOM05D007210 ORTHO05D006152 6.8e-15 85.1 168 35.7
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 8.8e-15 84.7 155 36.8
BraA10t43512Z Brassica rapa HOM05D007210 ORTHO05D006152 8.8e-15 84.7 181 35.4
A10p14200 Brassica napus HOM05D007210 ORTHO05D006152 1.2e-14 84.3 146 38.4
BraA10t43513Z Brassica rapa HOM05D007210 ORTHO05D006152 1.2e-14 84.3 146 38.4
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.2e-14 84.3 171 31.0
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 1.5e-14 84.0 159 28.9
C04p12630 Brassica napus HOM05D007210 ORTHO05D006152 4.4e-14 82.4 189 32.8
BcaB08g36043 Brassica carinata HOM05D007210 ORTHO05D006152 9.8e-14 81.3 126 38.9
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 1.3e-13 80.9 152 31.6
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 1.7e-13 80.5 119 41.2
BolC3t13972H Brassica oleracea HOM05D007210 ORTHO05D006152 1.7e-13 80.5 96 43.8
BolC4t22912H Brassica oleracea HOM05D007210 ORTHO05D006152 1.7e-13 80.5 189 32.3
BcaC04g20042 Brassica carinata HOM05D007210 ORTHO05D019922 8.3e-13 78.2 110 38.2
C09p48590 Brassica napus HOM05D007210 ORTHO05D006152 8.3e-13 78.2 144 37.5
BolC9t57696H Brassica oleracea HOM05D007210 ORTHO05D006152 8.3e-13 78.2 110 38.2
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 8.3e-13 78.2 115 38.3
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 8.3e-13 78.2 128 35.9
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 1.8e-12 77.0 128 31.2
Carub.0008s1740 Capsella rubella HOM05D007210 ORTHO05D006152 1.8e-12 77.0 176 32.4
BcaB08g36040 Brassica carinata HOM05D007210 ORTHO05D006152 3.1e-12 76.3 153 34.6
C03p15310 Brassica napus HOM05D007210 ORTHO05D006152 1.2e-11 74.3 149 36.9
BolC5t30124H Brassica oleracea HOM05D007210 ORTHO05D006152 2.0e-11 73.6 133 37.6
C05p13910 Brassica napus HOM05D007210 ORTHO05D006152 2.7e-11 73.2 135 37.0
BcaC02g11660 Brassica carinata HOM05D007210 ORTHO05D006152 1.3e-10 70.9 190 31.1
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.7e-10 70.5 133 34.6
BcaB05g21731 Brassica carinata HOM05D008885 ORTHO05D006152 1.7e-10 70.5 109 31.2
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 2.3e-10 70.1 113 37.2
BolC8t51626H Brassica oleracea HOM05D007210 ORTHO05D006152 5.0e-10 68.9 94 31.9
Thhalv10023805m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 1.9e-09 67.0 114 36.0
THA.LOC104809659 Tarenaya hassleriana HOM05D007210 ORTHO05D006152 2.5e-09 66.6 122 36.9
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 4.3e-09 65.9 113 35.4
AL8G32780 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.8e-08 63.2 152 28.9
AL7G39700 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 1.8e-07 60.5 125 32.0
Carub.0007s2602 Capsella rubella HOM05D008242 ORTHO05D012602 3.0e-07 59.7 117 30.8
vmacro16961 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 1.2e-06 57.8 116 35.3
CSS0006926 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 1.5e-06 57.4 138 30.4
Dinv01175 Davidia involucrata HOM05D008623 ORTHO05D007789 7.5e-06 55.1 127 31.5


User provided reference genes

Program Settings