Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 6.6e-271 936.8 476 100.0
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 1.1e-262 909.4 477 96.6
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 6.8e-260 900.2 479 96.2
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 4.1e-257 891.0 479 95.2
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 4.1e-257 891.0 479 95.2
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 4.4e-251 870.9 482 94.0
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 2.9e-250 868.2 476 92.0
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 4.7e-245 850.9 474 90.7
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 7.1e-241 837.0 465 90.8
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 8.1e-237 823.5 470 88.9
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.8e-236 822.4 466 89.5
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 7.1e-225 783.9 490 81.2
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 4.8e-221 771.2 468 82.3
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 9.7e-198 693.7 471 73.9
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 6.9e-188 661.0 468 71.2
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 7.4e-182 641.0 459 70.6
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 9.7e-182 640.6 461 69.0
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 1.7e-181 639.8 471 69.2
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 7.7e-179 630.9 468 69.0
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 2.5e-177 625.9 461 68.5
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 1.6e-176 623.2 459 68.2
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 1.6e-176 623.2 455 69.0
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 2.1e-176 622.9 467 68.1
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 3.6e-176 622.1 452 68.6
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 6.1e-176 621.3 447 70.5
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 6.1e-176 621.3 450 69.8
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 8.0e-176 620.9 455 69.7
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 8.0e-176 620.9 485 64.9
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 1.0e-175 620.5 455 69.7
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 4.0e-175 618.6 467 67.5
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 5.2e-175 618.2 473 67.4
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 5.2e-175 618.2 458 68.8
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 6.7e-175 617.8 457 69.1
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 8.8e-175 617.5 441 70.7
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 1.5e-174 616.7 452 67.9
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.0e-174 616.3 463 69.8
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 2.0e-174 616.3 462 67.1
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 3.3e-174 615.5 453 68.4
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 5.7e-174 614.8 467 67.7
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 7.5e-174 614.4 459 67.3
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 2.2e-173 612.8 453 68.2
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 2.8e-173 612.5 462 67.7
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 2.8e-173 612.5 474 66.2
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 6.3e-173 611.3 456 68.0
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 8.2e-173 610.9 458 67.7
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 3.1e-172 609.0 465 66.2
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 9.1e-172 607.4 458 69.7
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 2.0e-171 606.3 458 69.7
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 1.3e-170 603.6 452 68.1
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.3e-170 603.6 458 69.4
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 1.7e-170 603.2 458 65.9
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.0e-170 601.7 466 67.4
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 5.0e-170 601.7 464 67.9
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 6.5e-170 601.3 456 67.8
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.5e-169 600.1 466 67.2
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 1.5e-169 600.1 440 69.3
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 1.9e-169 599.7 493 63.5
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 7.2e-169 597.8 464 64.9
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 1.6e-168 596.7 465 65.2
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 4.7e-168 595.1 462 65.8
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 1.4e-167 593.6 462 65.6
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.8e-167 593.2 464 66.2
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 2.3e-167 592.8 447 67.1
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 1.7e-165 586.6 464 64.2
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 2.8e-165 585.9 464 64.0
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 3.1e-164 582.4 453 66.9
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 2.9e-162 575.9 458 64.4
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 1.1e-161 573.9 468 63.7
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 7.2e-161 571.2 429 68.3
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.8e-159 566.6 447 63.8
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 3.0e-159 565.8 464 62.9
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.5e-158 563.5 422 69.0
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 1.8e-156 556.6 445 63.4
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 2.0e-155 553.1 553 54.8
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.1e-152 543.1 461 61.6
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 6.1e-152 541.6 454 61.9
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 3.0e-151 539.3 311 87.1
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 4.4e-150 535.4 438 63.2
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 5.7e-150 535.0 424 66.3
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 2.9e-149 532.7 451 59.9
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 3.9e-146 522.3 471 56.7
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 5.0e-146 521.9 439 62.4
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.9e-145 520.0 367 71.7
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 1.9e-145 520.0 529 55.0
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 4.1e-140 502.3 458 58.1
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 1.1e-137 494.2 465 57.6
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 9.8e-134 481.1 370 65.7
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 1.4e-132 477.2 464 56.9
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 4.3e-129 465.7 469 57.8
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.6e-129 465.3 411 61.8
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.6e-129 465.3 376 63.8
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 5.6e-129 465.3 455 55.4
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 6.2e-128 461.8 502 53.8
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 1.9e-124 450.3 462 54.8
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 6.0e-123 445.3 366 63.9
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.2e-120 437.6 500 51.4
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 3.8e-117 426.0 318 68.6
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.1e-116 424.5 456 53.1
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 1.2e-115 421.0 357 61.3
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.1e-113 414.5 464 48.9
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 6.2e-112 408.7 330 62.4
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 1.5e-110 404.1 445 52.8
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 9.9e-110 401.4 470 47.7
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 2.4e-108 396.7 340 62.6
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 2.2e-101 373.6 436 50.0
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 2.4e-100 370.2 267 69.3
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 7.1e-100 368.6 480 44.6
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 3.7e-96 356.3 467 45.6
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 4.9e-93 345.9 303 57.1
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 1.9e-92 344.0 269 65.1
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 1.9e-81 307.4 363 48.2
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 7.4e-81 305.4 301 55.8
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 7.7e-70 268.9 282 53.9
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 5.2e-66 256.1 756 28.3
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 4.5e-62 243.0 451 36.6
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 6.3e-56 222.6 426 36.9
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 2.4e-55 220.7 155 70.3
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 3.6e-43 180.3 99 87.9
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.5e-41 174.9 175 59.4
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.7e-41 172.9 153 58.2
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 2.3e-37 161.0 449 29.6
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 2.9e-37 160.6 116 73.3
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 7.8e-30 136.0 175 47.4
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 5.6e-28 129.8 518 27.2
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.0e-25 121.3 67 83.6
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 4.9e-24 116.7 90 63.3
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.9e-24 116.7 108 59.3
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 2.1e-14 84.7 222 34.2
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.2e-09 68.9 113 40.7
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 4.4e-09 67.0 64 57.8
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 3.5e-06 57.4 44 61.4


User provided reference genes

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