Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.1e-112 410.2 236 100.0
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 9.3e-109 397.1 236 95.8
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 9.3e-109 397.1 236 95.8
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.3e-107 393.3 236 95.3
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 2.3e-107 392.5 236 95.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 6.6e-107 391.0 236 94.5
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.4e-96 356.7 236 86.4
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 6.9e-96 354.4 235 84.7
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 3.4e-95 352.1 235 83.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 4.5e-95 351.7 237 86.1
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 3.8e-94 348.6 235 83.8
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 6.2e-89 331.3 237 82.7
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.4e-88 329.3 235 81.3
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 4.5e-79 298.5 241 73.4
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 3.8e-78 295.4 240 74.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.5e-74 282.7 240 69.6
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.8e-73 279.3 239 69.5
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.8e-73 279.3 237 71.3
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 3.7e-73 278.9 240 69.6
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.4e-72 276.9 237 71.3
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 2.4e-72 276.2 240 70.8
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 6.9e-72 274.6 236 66.1
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.0e-71 273.1 236 66.1
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 6.5e-70 268.1 262 65.6
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.4e-69 266.9 237 67.9
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.2e-69 265.8 239 68.2
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 5.5e-69 265.0 236 66.9
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 7.2e-69 264.6 242 66.5
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.2e-68 263.8 239 69.0
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.6e-68 263.5 239 68.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.1e-68 263.1 239 63.6
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.6e-68 262.3 237 69.2
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.6e-68 262.3 237 69.2
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 2.3e-67 259.6 233 69.5
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.5e-66 256.9 236 66.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 2.0e-66 256.5 239 62.3
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 4.4e-66 255.4 236 67.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.3e-65 253.8 236 66.5
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.7e-65 253.4 240 67.9
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.7e-65 253.4 238 65.1
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 3.7e-65 252.3 236 65.3
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 6.3e-65 251.5 237 66.7
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 8.2e-65 251.1 184 73.4
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 8.2e-65 251.1 184 73.4
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.1e-64 250.8 247 59.5
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 2.4e-64 249.6 233 66.5
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 4.1e-64 248.8 243 65.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 9.1e-64 247.7 240 57.5
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 9.1e-64 247.7 238 64.3
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.2e-63 247.3 238 66.4
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.2e-63 247.3 168 82.1
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.5e-63 246.9 238 64.7
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.6e-63 246.1 233 66.1
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.6e-63 246.1 245 56.3
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 3.5e-63 245.7 274 60.2
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 5.9e-63 245.0 230 67.0
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 7.7e-63 244.6 209 71.3
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.7e-62 243.4 186 76.3
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.7e-62 243.4 237 59.9
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.7e-62 243.4 240 56.2
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 3.8e-62 242.3 240 57.5
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.8e-62 242.3 237 59.1
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 3.8e-62 242.3 168 81.0
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 6.5e-62 241.5 236 64.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 8.5e-62 241.1 238 62.2
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.9e-61 240.0 237 64.1
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.9e-61 240.0 248 59.3
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 9.4e-61 237.7 237 64.1
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 9.4e-61 237.7 226 63.3
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.6e-60 236.9 240 56.2
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.6e-60 235.7 237 59.9
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 8.0e-60 234.6 184 73.4
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.0e-59 234.2 240 61.2
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.0e-59 234.2 185 75.7
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.0e-59 234.2 236 57.2
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.4e-59 233.8 189 67.2
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 4.0e-59 232.3 236 61.4
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 6.7e-59 231.5 238 55.5
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 8.8e-59 231.1 194 63.9
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.1e-58 230.7 182 74.2
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.5e-58 230.3 236 56.8
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.5e-58 230.3 243 56.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 5.7e-58 228.4 270 49.6
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 7.5e-58 228.0 242 60.3
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 7.5e-58 228.0 185 73.5
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 7.5e-58 228.0 202 63.4
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 9.7e-58 227.6 238 62.2
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 9.7e-58 227.6 238 62.2
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.3e-57 227.3 173 76.3
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.7e-57 226.9 198 63.1
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 4.8e-57 225.3 186 69.4
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 4.1e-56 222.2 184 64.7
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 2.0e-55 219.9 255 60.4
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 2.6e-55 219.5 250 53.6
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 7.7e-55 218.0 185 64.3
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 3.8e-54 215.7 196 67.9
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.9e-53 213.4 197 58.4
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.1e-52 209.9 197 57.9
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 3.6e-52 209.1 185 62.7
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 6.1e-52 208.4 141 78.0
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 6.1e-52 208.4 202 59.9
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 5.4e-48 195.3 133 76.7
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 9.1e-48 194.5 237 57.0
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.2e-47 194.1 168 63.1
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.3e-46 190.7 311 43.1
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.0e-43 179.5 210 50.5
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 4.0e-43 179.1 183 55.2
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 4.0e-43 179.1 185 53.5
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.6e-39 167.2 130 76.9
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 4.3e-37 159.1 133 61.7
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 2.1e-36 156.8 143 58.7
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 5.2e-35 152.1 261 46.7
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.3e-33 147.5 98 76.5
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.3e-33 147.5 176 49.4
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.4e-32 144.1 98 74.5
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.4e-32 142.1 98 73.5
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.7e-31 139.8 94 74.5
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 7.3e-29 131.7 100 66.0
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.9e-25 119.8 202 41.1
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.7e-25 119.4 72 79.2
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 5.4e-24 115.5 153 47.7
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 9.2e-24 114.8 239 37.2
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.2e-23 114.4 239 36.8
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.6e-23 114.0 153 41.2
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 2.3e-22 110.2 100 54.0
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 3.0e-22 109.8 79 64.6
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 8.6e-22 108.2 259 32.8
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 5.6e-21 105.5 221 38.9
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 7.3e-21 105.1 135 48.1
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 7.3e-21 105.1 97 70.1
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 3.6e-20 102.8 240 35.0
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.3e-17 91.7 65 73.8
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 7.1e-16 88.6 162 37.7
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 3.9e-14 82.8 130 37.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 8.9e-11 71.6 109 40.4
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 4.4e-10 69.3 197 32.0
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 2.2e-09 67.0 108 40.7
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 4.9e-09 65.9 51 68.6
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 6.4e-09 65.5 119 37.8


User provided reference genes

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