Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31344 Brassica carinata HOM05D000202 ORTHO05D032440 5.9e-45 183.7 86 100.0
BcaB01g02555 Brassica carinata HOM05D000202 ORTHO05D000117 9.4e-27 123.2 63 90.5
BcaB07g31347 Brassica carinata HOM05D000202 ORTHO05D000117 3.0e-25 118.2 63 88.9
A09p16130 Brassica napus HOM05D000202 ORTHO05D000117 2.6e-24 115.2 63 84.1
BcaC04g22431 Brassica carinata HOM05D000202 ORTHO05D000117 9.7e-24 113.2 63 82.5
C09p19420 Brassica napus HOM05D000202 ORTHO05D000117 9.7e-24 113.2 63 82.5
BcaC02g10436 Brassica carinata HOM05D000202 ORTHO05D000117 2.9e-20 101.7 63 76.2
C04p28920 Brassica napus HOM05D000202 ORTHO05D000117 2.9e-20 101.7 63 76.2
BcaB07g31541 Brassica carinata HOM05D000202 ORTHO05D000117 6.5e-20 100.5 63 73.0
C04p29020 Brassica napus HOM05D000202 ORTHO05D000117 8.5e-20 100.1 63 73.0
Thhalv10024038m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 8.5e-20 100.1 63 73.0
CARHR049240 Cardamine hirsuta HOM05D000202 ORTHO05D000117 1.1e-19 99.8 63 76.2
BcaC02g10434 Brassica carinata HOM05D000202 ORTHO05D000117 1.9e-19 99.0 63 74.6
BcaC04g22674 Brassica carinata HOM05D000202 ORTHO05D000117 3.2e-19 98.2 63 71.4
BcaC04g22676 Brassica carinata HOM05D000202 ORTHO05D000117 3.2e-19 98.2 63 71.4
C09p16800 Brassica napus HOM05D000202 ORTHO05D000117 3.2e-19 98.2 63 71.4
Thhalv10024068m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 3.2e-19 98.2 63 73.0
C04p28950 Brassica napus HOM05D000202 ORTHO05D000117 5.5e-19 97.4 63 74.6
BcaC02g10430 Brassica carinata HOM05D000202 ORTHO05D000117 9.4e-19 96.7 63 71.4
BcaB06g28337 Brassica carinata HOM05D000202 ORTHO05D000117 1.2e-18 96.3 63 69.8
A09p13980 Brassica napus HOM05D000202 ORTHO05D000117 1.2e-18 96.3 63 69.8
BolC9t54849H Brassica oleracea HOM05D000202 ORTHO05D032440 1.2e-18 96.3 53 83.0
Thhalv10008193m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 1.6e-18 95.9 63 69.8
Thhalv10009882m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 1.6e-18 95.9 63 69.8
Thhalv10002041m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 2.1e-18 95.5 63 71.4
BolC4t24439H Brassica oleracea HOM05D000202 ORTHO05D000117 2.7e-18 95.1 63 73.0
A03p68070 Brassica napus HOM05D000202 ORTHO05D000117 3.6e-18 94.7 63 73.0
BraA01t02664Z Brassica rapa HOM05D000202 ORTHO05D000117 3.6e-18 94.7 63 73.0
Thhalv10022458m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 4.7e-18 94.4 64 71.9
Thhalv10024157m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 4.7e-18 94.4 64 71.9
BolC4t24432H Brassica oleracea HOM05D000202 ORTHO05D000117 1.8e-17 92.4 63 71.4
Thhalv10024127m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 1.8e-17 92.4 64 70.3
BolC4t24437H Brassica oleracea HOM05D000202 ORTHO05D000117 1.5e-16 89.4 63 69.8
C04p28900 Brassica napus HOM05D000202 ORTHO05D000117 3.4e-16 88.2 63 69.8
BolC4t24422H Brassica oleracea HOM05D000202 ORTHO05D000117 4.4e-16 87.8 63 68.3
BolC6t39343H Brassica oleracea HOM05D000202 ORTHO05D000117 9.8e-16 86.7 60 66.7
Thhalv10022446m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 2.2e-15 85.5 63 63.5
C06p40900 Brassica napus HOM05D000202 ORTHO05D000117 4.8e-15 84.3 60 65.0
Aa31LG1G1280 Aethionema arabicum HOM05D000202 ORTHO05D000117 3.1e-14 81.6 59 62.7
CARHR014040 Cardamine hirsuta HOM05D000202 ORTHO05D000117 5.4e-14 80.9 63 60.3
Thhalv10014078m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 5.4e-14 80.9 63 61.9
AT3G45070 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 7.0e-14 80.5 63 58.7
CARHR014030 Cardamine hirsuta HOM05D000202 ORTHO05D000117 7.0e-14 80.5 63 61.9
BcaB01g05744 Brassica carinata HOM05D000202 ORTHO05D000117 9.1e-14 80.1 63 60.3
BcaB01g05976 Brassica carinata HOM05D000202 ORTHO05D000117 9.1e-14 80.1 63 54.0
C03p02910 Brassica napus HOM05D000202 ORTHO05D000117 9.1e-14 80.1 63 54.0
BcaB03g13135 Brassica carinata HOM05D000202 ORTHO05D000117 1.6e-13 79.3 63 63.5
BcaC06g32585 Brassica carinata HOM05D000202 ORTHO05D000117 1.6e-13 79.3 60 63.3
A07p35350 Brassica napus HOM05D000202 ORTHO05D000117 1.6e-13 79.3 60 65.0
BraA07t31127Z Brassica rapa HOM05D000202 ORTHO05D000117 1.6e-13 79.3 60 65.0
Thhalv10008182m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 1.6e-13 79.3 63 65.1
Thhalv10014092m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 1.6e-13 79.3 63 61.9
Aa31LG1G1290 Aethionema arabicum HOM05D000202 ORTHO05D000117 4.5e-13 77.8 54 64.8
BcaC07g38699 Brassica carinata HOM05D000202 ORTHO05D000117 4.5e-13 77.8 63 61.9
BcaNung02432 Brassica carinata HOM05D000202 ORTHO05D000117 4.5e-13 77.8 64 54.7
A03p02560 Brassica napus HOM05D000202 ORTHO05D000117 4.5e-13 77.8 63 61.9
C08p16280 Brassica napus HOM05D000202 ORTHO05D000117 4.5e-13 77.8 63 61.9
CARHR014050 Cardamine hirsuta HOM05D000202 ORTHO05D032440 4.5e-13 77.8 63 57.1
AL7G26670 Arabidopsis lyrata HOM05D000202 ORTHO05D000117 5.9e-13 77.4 52 67.3
A08p32260 Brassica napus HOM05D000202 ORTHO05D000117 5.9e-13 77.4 63 61.9
BraA08t35149Z Brassica rapa HOM05D000202 ORTHO05D000117 5.9e-13 77.4 63 61.9
C03p02890 Brassica napus HOM05D000202 ORTHO05D000117 7.7e-13 77.0 51 68.6
AT4G26280 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 1.0e-12 76.6 55 63.6
BcaB01g05742 Brassica carinata HOM05D000202 ORTHO05D000117 1.0e-12 76.6 63 61.9
BcaC07g38702 Brassica carinata HOM05D000202 ORTHO05D000117 1.0e-12 76.6 63 65.1
C08p16320 Brassica napus HOM05D000202 ORTHO05D000117 1.0e-12 76.6 63 65.1
Carub.0001s1339 Capsella rubella HOM05D000202 ORTHO05D000117 1.0e-12 76.6 61 59.0
A10p30300 Brassica napus HOM05D000202 ORTHO05D000117 1.3e-12 76.3 60 61.7
BolC8t49251H Brassica oleracea HOM05D000202 ORTHO05D000117 1.3e-12 76.3 63 60.3
BraA10t45068Z Brassica rapa HOM05D000202 ORTHO05D000117 1.3e-12 76.3 60 61.7
A03p02570 Brassica napus HOM05D000202 ORTHO05D000117 1.7e-12 75.9 59 61.0
Sp7g03310 Schrenkiella parvula HOM05D000202 ORTHO05D000117 2.3e-12 75.5 53 66.0
BcaB01g05738 Brassica carinata HOM05D000202 ORTHO05D000117 2.9e-12 75.1 59 61.0
BcaC07g38701 Brassica carinata HOM05D000202 ORTHO05D000117 2.9e-12 75.1 63 61.9
A01p17540 Brassica napus HOM05D000202 ORTHO05D000117 2.9e-12 75.1 63 54.0
C08p16310 Brassica napus HOM05D000202 ORTHO05D000117 2.9e-12 75.1 63 61.9
BolC8t49255H Brassica oleracea HOM05D000202 ORTHO05D000117 2.9e-12 75.1 63 61.9
BraA01t01707Z Brassica rapa HOM05D000202 ORTHO05D000117 2.9e-12 75.1 63 54.0
Carub.0007s2881 Capsella rubella HOM05D000202 ORTHO05D000117 2.9e-12 75.1 55 65.5
BcaB01g05975 Brassica carinata HOM05D000202 ORTHO05D000117 3.8e-12 74.7 63 57.1
C03p02900 Brassica napus HOM05D000202 ORTHO05D000117 3.8e-12 74.7 63 57.1
BolC3t12846H Brassica oleracea HOM05D000202 ORTHO05D000117 3.8e-12 74.7 63 57.1
BcaC06g32762 Brassica carinata HOM05D000202 ORTHO05D000117 6.6e-12 73.9 63 54.0
C07p54780 Brassica napus HOM05D000202 ORTHO05D000117 6.6e-12 73.9 63 54.0
BraA03t09617Z Brassica rapa HOM05D000202 ORTHO05D000117 6.6e-12 73.9 62 59.7
BraA03t09618Z Brassica rapa HOM05D000202 ORTHO05D000117 6.6e-12 73.9 59 59.3
Aa31sc35G80 Aethionema arabicum HOM05D000202 ORTHO05D000117 8.6e-12 73.6 49 63.3
AT2G27570 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 1.1e-11 73.2 63 55.6
A03p02540 Brassica napus HOM05D000202 ORTHO05D000117 1.1e-11 73.2 59 59.3
BcaB01g05972 Brassica carinata HOM05D000202 ORTHO05D000117 1.5e-11 72.8 59 57.6
BraA03t09615Z Brassica rapa HOM05D000202 ORTHO05D000117 1.5e-11 72.8 59 59.3
Sp1g12250 Schrenkiella parvula HOM05D000202 ORTHO05D000117 1.5e-11 72.8 63 58.7
Sp1g35030 Schrenkiella parvula HOM05D000202 ORTHO05D000117 1.5e-11 72.8 63 58.7
AT3G45080 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 1.9e-11 72.4 63 55.6
BcaC09g50685 Brassica carinata HOM05D000202 ORTHO05D000117 1.9e-11 72.4 63 52.4
C01p22100 Brassica napus HOM05D000202 ORTHO05D000117 1.9e-11 72.4 63 52.4
BolC1t02141H Brassica oleracea HOM05D000202 ORTHO05D000117 1.9e-11 72.4 63 52.4
BolC8t49256H Brassica oleracea HOM05D000202 ORTHO05D000117 1.9e-11 72.4 63 63.5
Sp1g38860 Schrenkiella parvula HOM05D000202 ORTHO05D000117 1.9e-11 72.4 50 62.0
A03p56580 Brassica napus HOM05D000202 ORTHO05D000117 2.5e-11 72.0 63 52.4
BolC7t45967H Brassica oleracea HOM05D000202 ORTHO05D000117 2.5e-11 72.0 63 52.4
BraA03t14728Z Brassica rapa HOM05D000202 ORTHO05D000117 2.5e-11 72.0 63 52.4
A07p32120 Brassica napus HOM05D000202 ORTHO05D000117 4.2e-11 71.2 63 57.1
C06p37870 Brassica napus HOM05D000202 ORTHO05D000117 4.2e-11 71.2 63 57.1
BolC6t38888H Brassica oleracea HOM05D000202 ORTHO05D000117 4.2e-11 71.2 63 57.1
BraA07t30841Z Brassica rapa HOM05D000202 ORTHO05D000117 4.2e-11 71.2 63 57.1
BcaC09g50173 Brassica carinata HOM05D000202 ORTHO05D000117 1.2e-10 69.7 52 61.5
C01p28180 Brassica napus HOM05D000202 ORTHO05D000117 1.2e-10 69.7 52 61.5
BolC1t02750H Brassica oleracea HOM05D000202 ORTHO05D000117 1.2e-10 69.7 52 61.5
Carub.0005s1086 Capsella rubella HOM05D000202 ORTHO05D000117 1.2e-10 69.7 63 55.6
BcaC06g32761 Brassica carinata HOM05D000202 ORTHO05D000117 1.6e-10 69.3 60 53.3
BolC9t54466H Brassica oleracea HOM05D000202 ORTHO05D000117 1.6e-10 69.3 50 68.0
AT5G43690 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 2.1e-10 68.9 52 59.6
BcaB03g12130 Brassica carinata HOM05D000202 ORTHO05D000117 2.1e-10 68.9 64 56.2
BolC3t12843H Brassica oleracea HOM05D000202 ORTHO05D000117 2.1e-10 68.9 55 56.4
THA.LOC104818069 Tarenaya hassleriana HOM05D000202 ORTHO05D000117 2.1e-10 68.9 52 55.8
BcaC03g17235 Brassica carinata HOM05D000202 ORTHO05D000117 2.8e-10 68.6 52 59.6
BolC2t11255H Brassica oleracea HOM05D000202 ORTHO05D000117 2.8e-10 68.6 52 59.6
AL5G13540 Arabidopsis lyrata HOM05D000202 ORTHO05D000117 3.6e-10 68.2 52 59.6
A01p22630 Brassica napus HOM05D000202 ORTHO05D000117 4.7e-10 67.8 52 59.6
BraA01t02176Z Brassica rapa HOM05D000202 ORTHO05D000117 4.7e-10 67.8 52 59.6
CARHR024520 Cardamine hirsuta HOM05D000202 ORTHO05D000117 4.7e-10 67.8 47 68.1
BcaB07g30282 Brassica carinata HOM05D000202 ORTHO05D000117 6.1e-10 67.4 52 57.7
C02p51690 Brassica napus HOM05D000202 ORTHO05D000117 8.0e-10 67.0 52 57.7
A09p19410 Brassica napus HOM05D000202 ORTHO05D000117 1.0e-09 66.6 58 55.2
BraA08t34538Z Brassica rapa HOM05D000202 ORTHO05D000117 1.0e-09 66.6 63 54.0
BraA09t37557Z Brassica rapa HOM05D000202 ORTHO05D000117 1.0e-09 66.6 58 55.2
BcaC01g00011 Brassica carinata HOM05D000202 ORTHO05D000117 1.4e-09 66.2 63 52.4
BcaNung00318 Brassica carinata HOM05D000202 ORTHO05D000117 1.4e-09 66.2 52 57.7
BcaNung00320 Brassica carinata HOM05D000202 ORTHO05D000117 1.4e-09 66.2 52 57.7
C03p74790 Brassica napus HOM05D000202 ORTHO05D000117 1.4e-09 66.2 63 52.4
CARHR009210 Cardamine hirsuta HOM05D000202 ORTHO05D000117 1.4e-09 66.2 63 54.0
BcaC04g22024 Brassica carinata HOM05D000202 ORTHO05D000117 1.8e-09 65.9 52 57.7
C09p24460 Brassica napus HOM05D000202 ORTHO05D000117 1.8e-09 65.9 52 57.7
C09p24490 Brassica napus HOM05D000202 ORTHO05D000117 1.8e-09 65.9 52 57.7
BolC3t19728H Brassica oleracea HOM05D000202 ORTHO05D000117 1.8e-09 65.9 63 52.4
BolC9t55361H Brassica oleracea HOM05D000202 ORTHO05D000117 1.8e-09 65.9 52 57.7
BolC9t55363H Brassica oleracea HOM05D000202 ORTHO05D000117 1.8e-09 65.9 52 57.7
BolC9t55365H Brassica oleracea HOM05D000202 ORTHO05D000117 1.8e-09 65.9 52 57.7
AT2G03750 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 2.3e-09 65.5 52 57.7
A02p33570 Brassica napus HOM05D000202 ORTHO05D000117 2.3e-09 65.5 52 57.7
BolC6t37370H Brassica oleracea HOM05D000202 ORTHO05D000117 2.3e-09 65.5 51 60.8
BraA02t08378Z Brassica rapa HOM05D000202 ORTHO05D000117 2.3e-09 65.5 52 57.7
CARHR146140 Cardamine hirsuta HOM05D000202 ORTHO05D000117 3.0e-09 65.1 52 57.7
Thhalv10021105m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 3.0e-09 65.1 62 48.4
A08p25830 Brassica napus HOM05D000202 ORTHO05D000117 5.2e-09 64.3 63 50.8
Carub.0005s0289 Capsella rubella HOM05D000202 ORTHO05D000117 5.2e-09 64.3 52 57.7
BcaC09g48021 Brassica carinata HOM05D000202 ORTHO05D000117 6.8e-09 63.9 60 51.7
BcaC09g48075 Brassica carinata HOM05D000202 ORTHO05D000117 6.8e-09 63.9 60 51.7
CARHR027650 Cardamine hirsuta HOM05D000202 ORTHO05D000117 8.9e-09 63.5 47 61.7
Sp1g24360 Schrenkiella parvula HOM05D000202 ORTHO05D000117 8.9e-09 63.5 48 66.7
BraA01t04302Z Brassica rapa HOM05D000202 ORTHO05D000117 1.2e-08 63.2 50 58.0
Carub.0001s2660 Capsella rubella HOM05D000202 ORTHO05D000117 1.2e-08 63.2 47 61.7
THA.LOC104801835 Tarenaya hassleriana HOM05D000202 ORTHO05D000117 2.0e-08 62.4 53 54.7
THA.LOC104824053 Tarenaya hassleriana HOM05D000202 ORTHO05D000117 2.0e-08 62.4 57 49.1
AT1G28170 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 2.6e-08 62.0 47 63.8
Carub.0001s2661 Capsella rubella HOM05D000202 ORTHO05D000117 2.6e-08 62.0 47 61.7
BcaB02g09945 Brassica carinata HOM05D000202 ORTHO05D000117 3.4e-08 61.6 50 58.0
AT1G13420 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 5.7e-08 60.8 48 60.4
AT1G13430 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 5.7e-08 60.8 69 46.4
CARHR027660 Cardamine hirsuta HOM05D000202 ORTHO05D000117 5.7e-08 60.8 47 61.7
THA.LOC104801834 Tarenaya hassleriana HOM05D000202 ORTHO05D000117 7.5e-08 60.5 56 48.2
AT2G14920 Arabidopsis thaliana HOM05D000202 ORTHO05D000117 9.8e-08 60.1 65 50.8
Sp2g14580 Schrenkiella parvula HOM05D000202 ORTHO05D000117 9.8e-08 60.1 52 53.8
THA.LOC104801832 Tarenaya hassleriana HOM05D000202 ORTHO05D000117 1.3e-07 59.7 52 50.0
AL1G41710 Arabidopsis lyrata HOM05D000202 ORTHO05D000117 2.2e-07 58.9 47 61.7
Thhalv10009721m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 2.2e-07 58.9 65 47.7
Aa31LG10G14550 Aethionema arabicum HOM05D000202 ORTHO05D000117 2.8e-07 58.5 48 56.2
Aa31LG1G1260 Aethionema arabicum HOM05D000202 ORTHO05D000117 2.8e-07 58.5 48 56.2
BcaC09g48078 Brassica carinata HOM05D000202 ORTHO05D000117 2.8e-07 58.5 51 54.9
BcaNung06504 Brassica carinata HOM05D000202 ORTHO05D000117 2.8e-07 58.5 38 78.9
BolC1t05457H Brassica oleracea HOM05D000202 ORTHO05D000117 2.8e-07 58.5 51 54.9
BraA01t04303Z Brassica rapa HOM05D000202 ORTHO05D000117 2.8e-07 58.5 49 55.1
BcaB07g31689 Brassica carinata HOM05D000202 ORTHO05D000117 6.3e-07 57.4 49 55.1
AL1G25190 Arabidopsis lyrata HOM05D000202 ORTHO05D000117 8.3e-07 57.0 69 44.9
BcaC09g48019 Brassica carinata HOM05D000202 ORTHO05D000117 1.1e-06 56.6 50 54.0
AL1G41700 Arabidopsis lyrata HOM05D000202 ORTHO05D000117 1.8e-06 55.8 63 47.6
BcaC09g48073 Brassica carinata HOM05D000202 ORTHO05D000117 2.4e-06 55.5 49 53.1
BolC1t05460H Brassica oleracea HOM05D000202 ORTHO05D000117 2.4e-06 55.5 49 53.1
Thhalv10004760m.g Eutrema salsugineum HOM05D000202 ORTHO05D000117 4.1e-06 54.7 71 42.3
CARHR027640 Cardamine hirsuta HOM05D000202 ORTHO05D000117 5.4e-06 54.3 41 61.0
AL1G25180 Arabidopsis lyrata HOM05D000202 ORTHO05D000117 9.2e-06 53.5 42 57.1


User provided reference genes

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