Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 0.0e+00 1580.5 859 100.0
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 0.0e+00 1215.7 878 79.8
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 0.0e+00 1210.7 881 79.8
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 0.0e+00 1208.4 879 78.4
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 0.0e+00 1192.9 892 78.5
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 0.0e+00 1192.2 890 77.1
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 4.8e-272 941.4 938 62.8
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 8.2e-264 914.1 922 62.1
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 5.7e-257 891.3 921 61.2
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 3.0e-250 869.0 916 58.4
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 8.6e-213 744.6 961 53.0
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.5e-164 584.3 1003 40.7
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.0e-161 573.9 996 41.1
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 3.2e-98 364.0 990 32.7
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 3.3e-95 354.0 982 32.8
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.8e-93 348.2 981 32.7
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.2e-92 345.5 981 32.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 5.4e-90 336.7 975 30.8
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.4e-85 321.2 902 32.9
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 8.9e-85 319.3 960 30.8
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 7.8e-81 306.2 1049 29.6
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 5.3e-77 293.5 1070 28.9
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.0e-76 291.6 1044 28.3
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.6e-76 291.2 1072 28.4
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 5.8e-76 290.0 776 31.7
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 7.6e-76 289.7 525 37.0
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 1.7e-75 288.5 753 31.7
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 1.7e-75 288.5 1085 28.7
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 2.9e-75 287.7 998 29.1
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 2.4e-74 284.6 1070 27.6
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 4.2e-74 283.9 895 29.4
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.2e-73 282.3 1042 29.3
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.3e-72 278.9 979 28.5
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 3.0e-72 277.7 879 29.1
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 7.4e-71 273.1 966 28.8
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 9.6e-71 272.7 971 30.0
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.6e-70 271.9 788 30.3
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.1e-70 271.6 800 29.6
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 2.8e-70 271.2 841 28.9
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 1.1e-69 269.2 975 27.9
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 3.1e-69 267.7 724 31.1
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 6.9e-69 266.5 887 28.2
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.5e-68 265.4 528 35.8
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 9.9e-68 262.7 1016 26.9
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.7e-67 261.9 1014 26.8
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.7e-67 261.9 894 28.5
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 3.8e-67 260.8 979 28.5
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.4e-66 258.8 987 29.3
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 3.2e-66 257.7 609 30.4
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 9.3e-66 256.1 846 28.7
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.2e-65 255.8 964 30.1
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 6.0e-65 253.4 964 28.7
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 6.0e-65 253.4 720 29.6
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 1.8e-64 251.9 830 28.6
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 8.7e-64 249.6 1017 29.0
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 1.1e-63 249.2 716 30.0
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.1e-63 249.2 890 28.0
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.3e-63 247.7 605 30.4
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.6e-63 246.9 1035 26.2
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 7.4e-63 246.5 910 27.3
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 9.6e-63 246.1 722 32.1
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.3e-62 245.7 576 30.6
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 2.8e-62 244.6 872 28.0
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 8.1e-62 243.0 947 27.7
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.1e-61 242.7 1012 27.0
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 1.1e-61 242.7 1030 27.0
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 3.1e-61 241.1 721 29.3
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 4.0e-61 240.7 531 31.5
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 2.0e-60 238.4 524 33.0
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 3.4e-60 237.7 691 30.2
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 5.8e-60 236.9 699 28.3
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 7.6e-60 236.5 778 28.3
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 7.6e-60 236.5 703 28.9
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.3e-59 235.7 313 43.8
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 6.5e-59 233.4 892 28.6
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 5.5e-58 230.3 521 31.7
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 9.3e-58 229.6 711 31.6
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 3.5e-57 227.6 839 27.7
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 5.1e-56 223.8 521 31.3
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 8.7e-56 223.0 1010 25.8
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 2.5e-55 221.5 326 41.1
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 2.5e-55 221.5 323 39.9
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 4.3e-55 220.7 912 27.1
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 5.7e-55 220.3 874 26.2
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.6e-54 218.8 664 28.8
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 2.8e-54 218.0 320 39.4
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.8e-54 217.2 990 26.0
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 6.3e-54 216.9 519 31.2
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.8e-53 215.3 961 27.2
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 3.4e-52 211.1 951 26.1
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 2.7e-49 201.4 930 26.2
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 6.7e-48 196.8 914 27.2
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 1.8e-45 188.7 903 25.6
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 7.2e-42 176.8 322 35.4
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 9.7e-39 166.4 175 48.6
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.8e-38 164.9 845 25.2
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 3.7e-38 164.5 338 32.5
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 5.3e-37 160.6 319 33.2
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.2e-35 155.2 243 35.0
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 9.4e-34 149.8 917 25.6
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 8.2e-30 136.7 323 27.6
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.1e-29 136.3 199 37.7
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 1.8e-29 135.6 177 41.2
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.2e-28 132.9 200 37.5
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 2.0e-23 115.5 235 31.5
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 2.6e-23 115.2 663 25.2
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 1.8e-21 109.0 218 28.0
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.4e-16 92.8 190 29.5
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 2.6e-15 88.6 264 29.9
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 2.6e-15 88.6 222 27.9
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 5.7e-15 87.4 394 27.7
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.5e-11 73.9 229 27.9
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.6e-09 69.3 70 50.0


User provided reference genes

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