Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 4.0e-156 554.7 271 100.0
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 4.6e-136 488.0 277 88.8
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 4.6e-136 488.0 277 88.8
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 4.6e-136 488.0 277 88.8
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 1.0e-135 486.9 277 88.4
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 6.6e-127 457.6 281 84.0
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 2.4e-124 449.1 278 81.7
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 1.1e-121 440.3 281 79.7
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 1.0e-119 433.7 281 79.7
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 1.7e-114 416.4 279 78.1
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 4.8e-109 398.3 287 72.5
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 1.8e-108 396.4 292 70.5
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 7.1e-105 384.4 286 72.4
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 2.1e-96 356.3 272 66.9
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 3.0e-95 352.4 268 66.0
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 3.9e-95 352.1 274 66.1
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 3.3e-94 349.0 272 66.9
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 7.4e-94 347.8 274 66.4
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 6.3e-93 344.7 275 65.8
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 1.1e-92 344.0 270 65.2
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 1.4e-92 343.6 274 63.9
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 2.6e-91 339.3 225 74.7
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 4.5e-91 338.6 274 64.6
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 5.9e-91 338.2 274 62.8
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 3.8e-90 335.5 288 61.5
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 8.5e-90 334.3 277 60.6
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 1.9e-89 333.2 274 65.0
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 4.2e-89 332.0 274 61.3
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 7.2e-89 331.3 267 62.9
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 1.6e-88 330.1 269 61.3
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 1.6e-88 330.1 273 60.8
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 4.7e-88 328.6 271 62.0
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 4.7e-88 328.6 272 61.4
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 6.1e-88 328.2 273 60.1
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 6.1e-88 328.2 272 63.6
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 7.9e-88 327.8 283 61.5
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 1.0e-87 327.4 273 62.3
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.4e-87 327.0 275 60.7
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.8e-87 326.6 219 71.2
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.8e-87 326.6 231 69.3
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 2.3e-87 326.2 253 66.4
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 3.9e-87 325.5 228 68.9
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 5.1e-87 325.1 264 64.4
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 6.7e-87 324.7 261 62.1
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 1.5e-86 323.6 188 78.7
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 3.3e-86 322.4 180 80.0
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.7e-85 320.1 272 59.2
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 2.2e-85 319.7 272 61.8
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 2.8e-85 319.3 284 58.8
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 3.7e-85 318.9 255 64.3
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 6.3e-85 318.2 220 68.2
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 8.2e-85 317.8 216 69.4
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 2.4e-84 316.2 187 76.5
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 4.1e-84 315.5 305 56.1
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 5.3e-84 315.1 287 58.2
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 7.0e-84 314.7 271 61.3
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 9.1e-84 314.3 189 78.3
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 1.5e-83 313.5 235 65.5
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 2.0e-83 313.2 272 60.7
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 2.6e-83 312.8 242 66.9
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 3.4e-83 312.4 265 59.6
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 3.4e-83 312.4 296 56.4
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 5.9e-83 311.6 192 75.5
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 1.0e-82 310.8 224 69.6
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 1.3e-82 310.5 190 75.8
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 1.7e-82 310.1 223 69.5
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 3.8e-82 308.9 184 77.2
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 8.5e-82 307.8 183 78.1
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 7.2e-81 304.7 219 69.9
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 2.7e-80 302.8 220 65.9
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 2.7e-80 302.8 181 76.2
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 3.6e-80 302.4 277 57.8
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 8.0e-80 301.2 278 58.6
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 2.3e-79 299.7 212 66.5
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 6.7e-79 298.1 247 57.9
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 1.1e-76 290.8 222 63.1
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 6.5e-74 281.6 164 76.8
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 1.9e-73 280.0 257 56.4
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 4.2e-73 278.9 277 54.5
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 1.2e-72 277.3 265 54.7
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 1.6e-72 276.9 163 77.9
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 5.3e-68 261.9 158 75.3
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.7e-67 259.6 216 59.3
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 4.5e-67 258.8 154 77.3
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 3.8e-66 255.8 149 76.5
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 3.8e-66 255.8 170 68.2
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 4.7e-64 248.8 149 75.8
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 5.2e-63 245.4 263 52.9
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 2.6e-62 243.0 172 66.9
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 1.3e-61 240.7 231 56.7
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 3.7e-61 239.2 149 75.2
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 2.0e-59 233.4 163 71.8
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 1.0e-58 231.1 189 58.2
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 3.3e-57 226.1 215 52.6
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 5.5e-57 225.3 164 64.6
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 8.0e-56 221.5 196 54.1
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 5.2e-55 218.8 196 53.6
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 7.5e-54 214.9 238 50.8
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 4.1e-52 209.1 189 58.7
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 5.4e-52 208.8 173 64.2
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 2.8e-48 196.4 187 48.7
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 3.0e-47 193.0 176 57.4
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 1.1e-44 184.5 230 49.6
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 2.3e-42 176.8 207 47.8
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 5.0e-42 175.6 165 54.5
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 8.0e-40 168.3 247 39.3
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.4e-36 157.5 267 38.6
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 3.2e-36 156.4 148 52.0
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 1.3e-34 151.0 105 65.7
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.7e-34 150.6 216 40.7
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 2.3e-34 150.2 176 44.9
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 3.9e-34 149.4 91 71.4
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 1.3e-21 107.8 76 68.4
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 8.7e-10 68.6 44 68.2
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 4.0e-07 59.7 59 45.8


User provided reference genes

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