Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 1.4e-67 259.6 128 100.0
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 9.1e-30 134.0 65 98.5
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 9.1e-30 134.0 65 98.5
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.6e-29 132.5 65 96.9
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.6e-29 132.5 65 96.9
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.6e-29 132.5 65 96.9
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.6e-29 132.5 65 96.9
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.7e-28 129.8 68 91.2
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 2.2e-28 129.4 66 97.0
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-26 122.9 406 28.6
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.0e-25 120.6 65 89.2
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.8e-25 119.8 65 90.8
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 3.3e-24 115.5 65 84.6
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 6.3e-23 111.3 65 84.6
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 9.1e-22 107.5 65 81.5
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 4.5e-21 105.1 65 80.0
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.0e-20 104.0 65 75.4
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.2e-20 102.8 65 78.5
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 6.5e-20 101.3 65 73.8
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 6.5e-20 101.3 65 73.8
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 6.5e-20 101.3 65 80.0
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 8.5e-20 100.9 67 71.6
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 8.5e-20 100.9 67 71.6
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.1e-19 100.5 65 73.8
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.4e-19 100.1 68 67.6
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.4e-19 100.1 65 72.3
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-19 100.1 65 73.8
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.5e-19 99.4 65 72.3
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 2.5e-19 99.4 67 68.7
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 2.7e-18 95.9 65 69.2
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 4.7e-18 95.1 67 71.6
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.4e-17 93.6 65 67.7
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.7e-10 69.3 67 55.2
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 6.7e-09 64.7 66 54.5
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.5e-08 63.5 66 51.5
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 2.6e-08 62.8 66 53.0
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 3.3e-08 62.4 101 39.6
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 4.4e-08 62.0 58 56.9
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 7.5e-08 61.2 66 50.0
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.3e-07 60.5 62 48.4
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.3e-07 60.5 62 48.4
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 1.7e-07 60.1 101 38.6
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.2e-07 59.7 66 51.5
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.2e-07 59.7 66 51.5
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 2.2e-07 59.7 57 52.6
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 2.2e-07 59.7 57 52.6
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 4.8e-07 58.5 65 46.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.1e-06 57.4 65 44.6
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.4e-06 57.0 59 54.2
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.4e-06 57.0 66 50.0
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 1.8e-06 56.6 57 49.1
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 3.1e-06 55.8 66 47.0
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 3.1e-06 55.8 57 59.6
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.1e-06 55.8 57 59.6
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 3.1e-06 55.8 65 44.6
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 5.3e-06 55.1 62 46.8
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 5.3e-06 55.1 66 45.5
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 7.0e-06 54.7 57 59.6
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 9.1e-06 54.3 71 46.5
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 9.1e-06 54.3 94 34.0


User provided reference genes

Program Settings