Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 4.4e-116 421.4 224 100.0
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 1.1e-106 390.2 224 92.4
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 2.7e-105 385.6 225 92.0
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 2.7e-105 385.6 223 91.5
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 4.5e-105 384.8 223 91.5
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 4.5e-105 384.8 224 91.5
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 1.3e-104 383.3 224 89.3
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 8.0e-102 374.0 225 88.4
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 5.2e-93 344.7 228 81.6
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 1.2e-84 317.0 231 76.6
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 9.8e-84 313.9 229 75.1
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 4.9e-83 311.6 227 74.9
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 6.4e-83 311.2 231 74.5
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 3.2e-74 282.3 233 68.7
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 9.5e-63 244.2 193 67.9
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 1.2e-60 237.3 211 61.6
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 2.7e-57 226.1 219 56.6
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 3.5e-57 225.7 194 59.8
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 6.0e-57 224.9 191 61.8
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 7.8e-57 224.6 192 59.9
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 2.3e-56 223.0 194 60.8
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 8.6e-56 221.1 190 61.1
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 4.3e-55 218.8 204 59.3
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 4.3e-55 218.8 192 60.9
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 7.3e-55 218.0 190 61.6
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 7.3e-55 218.0 226 54.4
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 7.3e-55 218.0 216 56.5
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 9.6e-55 217.6 209 56.9
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 9.6e-55 217.6 216 55.1
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.2e-54 217.2 190 58.9
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 2.8e-54 216.1 196 58.7
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 6.2e-54 214.9 194 56.7
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 6.2e-54 214.9 224 53.6
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 6.2e-54 214.9 217 53.9
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 1.1e-53 214.2 197 60.4
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 1.1e-53 214.2 218 54.6
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 1.4e-53 213.8 204 56.4
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 1.8e-53 213.4 229 52.8
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.4e-53 213.0 226 52.7
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 2.4e-53 213.0 197 58.9
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 3.1e-53 212.6 207 57.5
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 4.0e-53 212.2 204 55.9
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 4.0e-53 212.2 214 54.2
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 4.0e-53 212.2 222 56.8
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 4.0e-53 212.2 210 53.8
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 5.2e-53 211.8 194 61.3
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 5.2e-53 211.8 211 53.6
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 6.8e-53 211.5 241 51.9
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 8.9e-53 211.1 221 54.3
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.2e-52 210.7 209 54.1
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 2.0e-52 209.9 197 58.9
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 2.6e-52 209.5 180 61.7
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 3.4e-52 209.1 193 56.5
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 5.8e-52 208.4 228 52.6
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 7.6e-52 208.0 220 52.3
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 7.6e-52 208.0 211 54.5
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 1.3e-51 207.2 235 51.1
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 2.2e-51 206.5 214 51.9
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 2.9e-51 206.1 235 51.1
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 3.8e-51 205.7 184 59.2
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 8.4e-51 204.5 163 62.6
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 3.2e-50 202.6 178 56.7
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 4.2e-50 202.2 178 56.7
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 4.2e-50 202.2 218 51.8
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 5.4e-50 201.8 223 50.2
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 9.3e-50 201.1 192 57.3
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 2.1e-49 199.9 216 52.3
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 3.9e-48 195.7 167 64.1
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 4.3e-47 192.2 205 50.7
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 4.3e-47 192.2 188 58.0
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 5.6e-47 191.8 194 52.6
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 7.3e-47 191.4 193 51.8
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.6e-46 190.3 205 50.7
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 1.6e-46 190.3 251 47.8
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 3.6e-46 189.1 167 58.1
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 8.1e-46 188.0 162 62.3
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 8.1e-46 188.0 216 49.5
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.1e-45 187.6 170 60.6
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 2.4e-42 176.4 190 51.6
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 4.6e-41 172.2 204 49.5
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 3.0e-40 169.5 169 54.4
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 3.0e-40 169.5 194 47.9
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 4.3e-39 165.6 225 42.7
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 7.4e-39 164.9 196 49.5
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.6e-38 163.7 205 47.8
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 3.6e-38 162.5 223 43.9
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 9.0e-37 157.9 129 65.1
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 2.6e-36 156.4 196 45.4
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 7.6e-36 154.8 130 63.8
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.4e-34 149.8 190 47.4
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 4.6e-33 145.6 190 46.8
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 1.1e-31 141.0 121 57.0
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 5.6e-31 138.7 192 45.8
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 1.6e-30 137.1 171 41.5
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 2.1e-30 136.7 189 43.4
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 1.1e-29 134.4 203 43.3
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 7.1e-26 121.7 135 49.6
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 5.7e-23 112.1 103 54.4
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 6.3e-22 108.6 89 61.8
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 6.5e-19 98.6 151 41.7
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 1.1e-18 97.8 88 54.5
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 3.2e-18 96.3 187 36.4
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 2.7e-17 93.2 73 61.6
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 1.8e-16 90.5 109 45.9
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.6e-09 67.4 89 44.9
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 3.7e-06 56.2 47 57.4


User provided reference genes

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