Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 1.5e-52 209.1 99 100.0
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 3.1e-50 201.4 99 96.0
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 3.1e-50 201.4 99 96.0
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 3.1e-50 201.4 99 96.0
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 5.3e-50 200.7 99 96.0
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 9.1e-50 199.9 99 96.0
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 1.2e-49 199.5 99 92.9
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 1.7e-48 195.7 99 90.9
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 1.7e-48 195.7 99 90.9
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 1.7e-48 195.7 99 90.9
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 1.7e-48 195.7 99 90.9
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 1.2e-44 183.0 99 83.8
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 9.8e-44 179.9 99 84.8
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 1.4e-42 176.0 99 82.8
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 3.2e-39 164.9 97 78.4
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 5.5e-39 164.1 99 79.8
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 7.2e-39 163.7 99 77.8
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 7.2e-39 163.7 96 78.1
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 4.7e-38 161.0 97 76.3
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 8.0e-38 160.2 97 75.3
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 5.2e-37 157.5 97 75.3
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 6.8e-37 157.1 95 74.7
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 8.8e-37 156.8 95 75.8
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 1.2e-36 156.4 102 72.5
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 1.2e-36 156.4 97 75.3
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 1.5e-36 156.0 97 75.3
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 2.6e-36 155.2 97 74.2
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 4.4e-36 154.5 95 74.7
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 4.4e-36 154.5 95 74.7
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 5.7e-36 154.1 97 73.2
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 9.8e-36 153.3 97 74.2
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 1.7e-35 152.5 95 74.7
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.7e-35 152.5 94 74.5
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 2.2e-35 152.1 95 74.7
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 4.9e-35 151.0 94 71.3
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 6.3e-35 150.6 97 72.2
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 6.3e-35 150.6 95 74.7
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 8.3e-35 150.2 98 72.4
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 8.3e-35 150.2 97 73.2
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 8.3e-35 150.2 97 73.2
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 8.3e-35 150.2 97 72.2
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 8.3e-35 150.2 97 73.2
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 8.3e-35 150.2 95 71.6
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.1e-34 149.8 97 73.2
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 1.4e-34 149.4 95 70.5
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 1.8e-34 149.1 98 69.4
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 3.1e-34 148.3 97 73.2
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 3.1e-34 148.3 97 73.2
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 4.1e-34 147.9 95 73.7
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 7.0e-34 147.1 97 71.1
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.0e-34 147.1 95 72.6
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 7.0e-34 147.1 95 72.6
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 7.0e-34 147.1 97 72.2
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 7.0e-34 147.1 95 70.5
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 1.2e-33 146.4 99 70.7
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 1.2e-33 146.4 95 70.5
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 2.0e-33 145.6 95 70.5
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 2.0e-33 145.6 95 71.6
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 2.0e-33 145.6 97 69.1
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 2.7e-33 145.2 97 71.1
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 3.5e-33 144.8 95 71.6
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 3.5e-33 144.8 97 71.1
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 3.5e-33 144.8 97 71.1
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 4.5e-33 144.4 95 70.5
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 4.5e-33 144.4 97 70.1
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 5.9e-33 144.1 95 69.5
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 5.9e-33 144.1 97 70.1
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 5.9e-33 144.1 100 68.0
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.3e-32 142.9 95 68.4
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.3e-32 142.9 95 68.4
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.7e-32 142.5 95 68.4
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.7e-32 142.5 95 68.4
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 1.7e-32 142.5 97 66.0
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 3.8e-32 141.4 95 68.4
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 5.0e-32 141.0 96 70.8
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 5.0e-32 141.0 97 69.1
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 6.6e-32 140.6 98 66.3
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 1.1e-31 139.8 99 63.6
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 1.5e-31 139.4 97 69.1
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 1.9e-31 139.0 97 68.0
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 4.3e-31 137.9 97 67.0
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 9.5e-31 136.7 96 68.8
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 1.6e-30 136.0 97 68.0
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 2.1e-30 135.6 97 69.1
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 2.8e-30 135.2 97 64.9
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 2.8e-30 135.2 89 71.9
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 3.6e-30 134.8 104 60.6
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 4.7e-30 134.4 94 68.1
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 1.0e-29 133.3 95 66.3
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 3.0e-29 131.7 86 69.8
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 8.9e-29 130.2 104 59.6
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 1.2e-28 129.8 95 61.1
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 2.0e-28 129.0 92 64.1
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 2.0e-28 129.0 97 66.0
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 2.6e-28 128.6 98 64.3
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 5.7e-28 127.5 95 61.1
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 9.8e-28 126.7 96 61.5
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.7e-27 125.9 100 61.0
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 2.9e-27 125.2 99 62.6
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 1.4e-26 122.9 85 67.1
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 1.8e-26 122.5 99 60.6
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 9.2e-26 120.2 99 54.5
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 1.6e-25 119.4 79 69.6
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 4.6e-25 117.9 95 57.9
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 5.9e-25 117.5 100 57.0
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 7.8e-25 117.1 93 60.2
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 3.0e-24 115.2 97 57.7
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 3.9e-24 114.8 100 58.0
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 3.9e-24 114.8 85 64.7
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 3.9e-24 114.8 85 64.7
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 5.0e-24 114.4 93 60.2
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.1e-23 113.2 92 58.7
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.5e-23 112.1 92 60.9
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 9.5e-23 110.2 96 53.1
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 4.7e-22 107.8 78 64.1
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.2e-22 107.5 93 54.8
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.0e-20 102.4 99 51.5
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 2.6e-20 102.1 88 60.2
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 3.4e-20 101.7 87 62.1
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 5.8e-20 100.9 70 67.1
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.9e-16 88.2 97 43.3
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 2.5e-15 85.5 97 51.5
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 3.4e-12 75.1 95 41.1
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 3.7e-11 71.6 91 40.7
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 4.9e-11 71.2 100 41.0
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 1.1e-10 70.1 88 38.6
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 4.1e-10 68.2 41 70.7
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 3.9e-08 61.6 54 50.0
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 1.1e-07 60.1 57 56.1


User provided reference genes

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