Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31008 Brassica carinata HOM05D006457 ORTHO05D008275 1.1e-134 483.4 254 100.0
A09p20470 Brassica napus HOM05D006457 ORTHO05D008275 9.3e-131 470.3 251 98.4
BolC9t55493H Brassica oleracea HOM05D006457 ORTHO05D008275 8.7e-129 463.8 251 97.6
Sp2g08310 Schrenkiella parvula HOM05D006457 ORTHO05D008275 1.9e-128 462.6 254 96.9
BraA09t37652Z Brassica rapa HOM05D006457 ORTHO05D008275 2.5e-128 462.2 261 94.6
Thhalv10003253m.g Eutrema salsugineum HOM05D006457 ORTHO05D008275 1.3e-127 459.9 254 96.5
C09p25850 Brassica napus HOM05D006457 ORTHO05D008275 3.6e-127 458.4 251 96.8
CARHR180150 Cardamine hirsuta HOM05D006457 ORTHO05D008275 4.8e-127 458.0 254 95.3
BcaC04g21915 Brassica carinata HOM05D006457 ORTHO05D008275 3.1e-126 455.3 254 96.5
AT5G43430 Arabidopsis thaliana HOM05D006457 ORTHO05D008275 1.2e-125 453.4 254 94.1
AL8G16870 Arabidopsis lyrata HOM05D006457 ORTHO05D008275 2.6e-125 452.2 254 93.7
Carub.0008s0516 Capsella rubella HOM05D006457 ORTHO05D008275 1.2e-122 443.4 254 92.1
Aa31LG5G3680 Aethionema arabicum HOM05D006457 ORTHO05D008275 7.9e-122 440.7 254 92.1
THA.LOC104801088 Tarenaya hassleriana HOM05D006457 ORTHO05D008275 2.8e-119 432.2 254 89.0
Lj6A662T59 Lonicera japonica HOM05D006457 ORTHO05D008275 1.8e-113 412.9 254 83.9
Duzib212G0218 Durio zibethinus HOM05D006457 ORTHO05D008275 6.7e-113 411.0 254 82.7
Gohir.A09G058300 Gossypium hirsutum HOM05D006457 ORTHO05D008275 6.7e-113 411.0 254 82.7
Gorai.006G072000 Gossypium raimondii HOM05D006457 ORTHO05D008275 6.7e-113 411.0 254 82.3
Atru.chr4.2091 Acer truncatum HOM05D006457 ORTHO05D008275 5.7e-112 407.9 254 83.1
ClCG05G004380 Citrullus lanatus HOM05D006457 ORTHO05D008275 7.4e-112 407.5 252 81.3
Cfa008326 Carpinus fangiana HOM05D006457 ORTHO05D008275 9.6e-112 407.1 254 81.5
Thecc.04G253200 Theobroma cacao HOM05D006457 ORTHO05D008275 1.3e-111 406.8 254 82.7
Haze_11345 Corylus avellana HOM05D006457 ORTHO05D008275 2.1e-111 406.0 254 81.1
Sed0004292 Sechium edule HOM05D006457 ORTHO05D008275 8.2e-111 404.1 254 79.9
MELO3C006434.2 Cucumis melo HOM05D006457 ORTHO05D008275 1.1e-110 403.7 254 81.1
TPR.G26440 Trifolium pratense HOM05D006457 ORTHO05D008275 1.1e-110 403.7 254 81.5
Potri.008G165800 Populus trichocarpa HOM05D006457 ORTHO05D008275 1.4e-110 403.3 254 81.5
CsaV3_3G012200 Cucumis sativus L. HOM05D006457 ORTHO05D008275 1.8e-110 402.9 254 81.1
QL06p016992 Quercus lobata HOM05D006457 ORTHO05D008275 4.1e-110 401.7 253 80.2
Psat6g128760 Pisum sativum HOM05D006457 ORTHO05D008275 5.3e-110 401.4 254 81.9
Manes.03G165500 Manihot esculenta HOM05D006457 ORTHO05D008275 9.0e-110 400.6 254 80.7
Medtr1g074170 Medicago truncatula HOM05D006457 ORTHO05D008275 1.2e-109 400.2 254 81.5
GSVIVG01027767001 Vitis vinifera HOM05D006457 ORTHO05D008275 2.0e-109 399.4 254 79.9
CAN.G793.35 Capsicum annuum HOM05D006457 ORTHO05D008275 2.6e-109 399.1 254 81.5
Nn1g02723 Nelumbo nucifera HOM05D006457 ORTHO05D008275 2.6e-109 399.1 254 79.9
Hund03034 Selenicereus undatus HOM05D006457 ORTHO05D008275 2.6e-109 399.1 254 80.3
Hma1.2p1_0267F.1_g107360 Hydrangea macrophylla HOM05D006457 ORTHO05D008275 3.4e-109 398.7 254 79.5
Nn3g19624 Nelumbo nucifera HOM05D006457 ORTHO05D008275 4.5e-109 398.3 254 80.3
VMungo0720G2635 Vigna mungo HOM05D006457 ORTHO05D008275 4.5e-109 398.3 254 81.1
Ah.04g156060 Amaranthus hybridus HOM05D006457 ORTHO05D008275 5.9e-109 397.9 255 80.4
Ciclev10005707m.g Citrus clementina HOM05D006457 ORTHO05D008275 5.9e-109 397.9 254 80.7
Solyc09g089880.3 Solanum lycopersicum HOM05D006457 ORTHO05D008275 7.6e-109 397.5 254 81.5
Lj5g0021789 Lotus japonicus HOM05D006457 ORTHO05D008275 1.0e-108 397.1 254 80.3
AUR62002111 Chenopodium quinoa HOM05D006457 ORTHO05D008275 1.3e-108 396.7 254 79.9
MD13G1212500 Malus domestica HOM05D006457 ORTHO05D008275 1.3e-108 396.7 254 80.7
PGSC0003DMG400017180 Solanum tuberosum HOM05D006457 ORTHO05D008275 1.3e-108 396.7 254 81.5
Sc19g0003600 Simmondsia chinensis HOM05D006457 ORTHO05D008275 1.7e-108 396.4 254 80.3
HanXRQChr05g0134481 Helianthus annuus HOM05D006457 ORTHO05D008275 2.9e-108 395.6 254 79.1
Lsat_1_v5_gn_5_72441 Lactuca sativa HOM05D006457 ORTHO05D008275 2.9e-108 395.6 251 80.5
Aqoxy5G00253 Aquilegia oxysepala HOM05D006457 ORTHO05D008275 3.8e-108 395.2 261 78.5
Prupe.1G037500 Prunus persica HOM05D006457 ORTHO05D008275 3.8e-108 395.2 254 80.3
Sopen09g032820 Solanum pennellii HOM05D006457 ORTHO05D008275 6.5e-108 394.4 254 81.9
PGR031G3937 Punica granatum HOM05D006457 ORTHO05D008275 8.4e-108 394.0 254 78.3
Cc03_g05380 Coffea canephora HOM05D006457 ORTHO05D008275 1.1e-107 393.7 254 79.5
ECA233G3697 Erigeron canadensis HOM05D006457 ORTHO05D008275 1.1e-107 393.7 252 79.4
EL10Ac3g05029 Beta vulgaris HOM05D006457 ORTHO05D008275 2.5e-107 392.5 255 78.8
TAR636G2559 Trochodendron aralioides HOM05D006457 ORTHO05D008275 3.2e-107 392.1 254 79.9
MBI18_g15334_MAGBIO Magnolia biondii HOM05D006457 ORTHO05D008275 4.2e-107 391.7 254 78.7
CSS0034990 Camellia sinensis var. sinensis HOM05D006457 ORTHO05D008275 5.5e-107 391.3 254 78.3
DCAR_027307 Daucus carota HOM05D006457 ORTHO05D008275 7.2e-107 391.0 254 78.0
Ca_09820_v3 Cicer arietinum L. HOM05D006457 ORTHO05D008275 9.3e-107 390.6 282 73.4
Lalb_Chr02g0150531 Lupinus albus HOM05D006457 ORTHO05D008275 9.3e-107 390.6 254 78.0
Nitab4.5_0003897g0020 Nicotiana tabacum HOM05D006457 ORTHO05D008275 9.3e-107 390.6 254 80.7
Peaxi162Scf00024g02411 Petunia axillaris HOM05D006457 ORTHO05D008275 1.2e-106 390.2 254 79.9
vmacro15431 Vaccinium macrocarpon HOM05D006457 ORTHO05D008275 1.6e-106 389.8 254 79.9
FvH4_4g03430 Fragaria vesca HOM05D006457 ORTHO05D008275 2.1e-106 389.4 254 78.7
Phvul.007G128300 Phaseolus vulgaris HOM05D006457 ORTHO05D008275 2.7e-106 389.0 254 79.9
Sabra08G0126300 Salix brachista HOM05D006457 ORTHO05D008275 2.7e-106 389.0 284 73.6
FAN22G0441 Fragaria x ananassa HOM05D006457 ORTHO05D008275 4.6e-106 388.3 254 78.7
Glyma.10G187300 Glycine max HOM05D006457 ORTHO05D008275 6.1e-106 387.9 254 78.3
Actinidia39894 Actinidia chinensis HOM05D006457 ORTHO05D008275 1.0e-105 387.1 254 78.7
Nitab4.5_0000342g0030 Nicotiana tabacum HOM05D006457 ORTHO05D008275 1.3e-105 386.7 254 80.3
Eucgr.H00173 Eucalyptus grandis HOM05D006457 ORTHO05D008275 1.8e-105 386.3 254 78.3
MSTRG.9902 Avicennia marina HOM05D006457 ORTHO05D008275 2.3e-105 386.0 254 78.3
HPP92_025980 Vanilla planifolia HOM05D006457 ORTHO05D008275 3.9e-105 385.2 254 76.4
Migut.N00260 Erythranthe guttata HOM05D006457 ORTHO05D008275 5.1e-105 384.8 254 78.0
Rhsim02G0036100 Rhododendron simsii HOM05D006457 ORTHO05D008275 5.1e-105 384.8 254 78.3
Glyma.20G203200 Glycine max HOM05D006457 ORTHO05D008275 6.7e-105 384.4 254 77.2
RcHm_v2.0_Chr4g0392411 Rosa chinensis HOM05D006457 ORTHO05D008275 6.7e-105 384.4 254 78.7
PSO832G2062 Papaver somniferum HOM05D006457 ORTHO05D008275 1.1e-104 383.6 258 77.9
arahy.Tifrunner.gnm1.ann1.YH23E2 Arachis hypogaea HOM05D006457 ORTHO05D008275 1.9e-104 382.9 252 77.8
PSO210G6447 Papaver somniferum HOM05D006457 ORTHO05D008275 1.9e-104 382.9 258 77.5
arahy.Tifrunner.gnm1.ann1.AG4MDC Arachis hypogaea HOM05D006457 ORTHO05D008275 2.5e-104 382.5 254 77.2
ATR0680G075 Amborella trichopoda HOM05D006457 ORTHO05D008275 9.0e-102 374.0 254 78.0
SGA_v2.0_scaffold67G22771 Striga asiatica HOM05D006457 ORTHO05D008275 1.0e-100 370.5 285 69.8
FAN17G1464 Fragaria x ananassa HOM05D006457 ORTHO05D008275 1.3e-100 370.2 254 76.0
SEGI_23974 Sequoiadendron giganteum HOM05D006457 ORTHO05D008275 2.9e-100 369.0 254 75.2
Dinv27040 Davidia involucrata HOM05D006457 ORTHO05D008275 3.2e-99 365.5 241 77.6
Os04g0182800 Oryza sativa ssp. japonica HOM05D006457 ORTHO05D008275 3.2e-99 365.5 257 73.5
Zm00001eb419600 Zea mays HOM05D006457 ORTHO05D008275 2.5e-96 355.9 257 72.0
SMO145G0254 Selaginella moellendorffii HOM05D006457 ORTHO05D008275 4.1e-94 348.6 253 70.0
Mapoly0061s0138 Marchantia polymorpha HOM05D006457 ORTHO05D008275 2.6e-93 345.9 254 71.3
AUR62028231 Chenopodium quinoa HOM05D006457 ORTHO05D008275 4.5e-93 345.1 222 79.3
FAN12G4283 Fragaria x ananassa HOM05D006457 ORTHO05D008275 1.7e-92 343.2 273 68.1
Pp3c16_12620 Physcomitrium patens HOM05D006457 ORTHO05D008275 2.2e-92 342.8 254 69.7
AagrBONN_evm.TU.Sc2ySwM_228.708 Anthoceros agrestis HOM05D006457 ORTHO05D008275 1.4e-91 340.1 254 70.9
SHI00666 Sapria himalayana HOM05D006457 ORTHO05D008275 1.4e-89 333.6 269 63.9
TWI73G0230 Tripterygium wilfordii HOM05D006457 ORTHO05D008275 5.1e-89 331.6 254 70.5
THA.LOC104826077 Tarenaya hassleriana HOM05D006457 ORTHO05D008275 7.4e-88 327.8 231 78.4
Cpa.g.sc44.77 Carica papaya HOM05D006457 ORTHO05D008275 2.2e-87 326.2 257 68.5
Haze_27028 Corylus avellana HOM05D006457 ORTHO05D008275 6.1e-82 308.1 254 64.2
Gohir.D09G057800 Gossypium hirsutum HOM05D006457 ORTHO05D008275 6.7e-81 304.7 192 80.2
unitig_748.g7323 Utricularia gibba HOM05D006457 ORTHO05D008275 1.1e-78 297.4 193 79.3
CiPaw.02G113800 Carya illinoinensis HOM05D006457 ORTHO05D008275 9.1e-78 294.3 179 83.2
SalBow3G1824 Salvia bowleyana HOM05D006457 ORTHO05D008275 1.6e-77 293.5 276 61.6
Dinv29877 Davidia involucrata HOM05D006457 ORTHO05D008275 5.0e-76 288.5 179 81.0
Hma1.2p1_0267F.1_g107350 Hydrangea macrophylla HOM05D006457 ORTHO05D008275 1.0e-73 280.8 178 78.7
Cre12.g554953 Chlamydomonas reinhardtii HOM05D006457 ORTHO05D008275 4.0e-73 278.9 279 55.9
PRCOL_00002410 Prasinoderma coloniale HOM05D006457 ORTHO05D008275 2.7e-69 266.2 256 57.0
Haze_27526 Corylus avellana HOM05D006457 ORTHO05D008275 5.5e-67 258.5 254 58.3
CANSAT78G2507 Cannabis sativa HOM05D006457 ORTHO05D008275 1.6e-61 240.4 146 79.5
Haze_26122 Corylus avellana HOM05D006457 ORTHO05D008275 1.6e-61 240.4 255 52.5
CDE05G1545 Ceratophyllum demersum HOM05D006457 ORTHO05D008275 1.7e-60 236.9 146 78.1
Cfa021602 Carpinus fangiana HOM05D006457 ORTHO05D008275 8.6e-60 234.6 254 49.6
Zm00001eb087650 Zea mays HOM05D006457 ORTHO05D008275 7.3e-43 178.3 124 74.2
Oeu011992.1 Olea europaea HOM05D006457 ORTHO05D008275 2.8e-34 149.8 86 84.9
HanXRQChr03g0066771 Helianthus annuus HOM05D006457 ORTHO05D008275 4.0e-33 146.0 97 73.2
MD16G1216100 Malus domestica HOM05D006457 ORTHO05D008275 5.4e-30 135.6 93 71.0
Oeu063893.1 Olea europaea HOM05D006457 ORTHO05D000397 1.4e-22 110.9 86 66.3
MBI15_g29425_MAGBIO Magnolia biondii HOM05D016614 ORTHO05D012466 8.4e-15 85.1 63 60.3
Hma1.2p1_0267F.1_g107370 Hydrangea macrophylla HOM05D006457 ORTHO05D008275 6.7e-12 75.5 49 75.5
VMungo0720G2370 Vigna mungo HOM05D006457 ORTHO05D008275 3.6e-10 69.7 48 68.8
RcHm_v2.0_Chr5g0058341 Rosa chinensis HOM05D006457 ORTHO05D008275 2.6e-08 63.5 34 79.4


User provided reference genes

Program Settings