Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 2.8e-49 198.4 103 100.0
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 5.2e-48 194.1 103 97.1
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 5.2e-48 194.1 103 97.1
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.5e-47 192.6 103 97.1
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.5e-47 192.6 103 97.1
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 9.8e-47 189.9 103 95.1
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.3e-46 189.5 102 96.1
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 2.2e-46 188.7 103 94.2
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 2.2e-46 188.7 103 94.2
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.9e-46 188.3 103 95.1
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 2.9e-46 188.3 102 94.1
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.9e-46 188.3 103 95.1
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 3.7e-46 188.0 102 95.1
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 8.3e-46 186.8 103 93.2
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 4.1e-45 184.5 103 93.2
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 4.6e-44 181.0 103 90.3
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 4.6e-44 181.0 103 90.3
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 3.0e-43 178.3 103 88.3
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 5.0e-43 177.6 103 88.3
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 4.3e-42 174.5 102 87.3
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 7.3e-42 173.7 103 85.4
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 4.4e-39 164.5 103 79.6
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 7.5e-39 163.7 103 78.6
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 7.5e-39 163.7 103 78.6
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 2.2e-38 162.2 103 78.6
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 4.9e-38 161.0 103 77.7
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 4.9e-38 161.0 103 77.7
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 78.6
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 1.4e-37 159.5 103 78.6
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 1.9e-37 159.1 102 76.5
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 77.7
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 7.0e-37 157.1 102 77.5
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 9.2e-37 156.8 103 77.7
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 76.7
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 76.7
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 75.7
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 7.8e-36 153.7 103 72.8
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 7.8e-36 153.7 101 75.2
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.0e-35 153.3 100 78.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.0e-35 153.3 100 78.0
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.0e-35 153.3 103 72.8
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.0e-35 153.3 102 73.5
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.0e-35 153.3 103 76.7
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.3e-35 152.9 99 78.8
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.3e-35 152.9 103 73.8
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 73.8
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 73.8
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 73.8
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 2.3e-35 152.1 103 73.8
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 2.3e-35 152.1 100 73.0
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 2.3e-35 152.1 102 72.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 2.3e-35 152.1 103 75.7
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 3.0e-35 151.8 103 72.8
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 3.9e-35 151.4 103 73.8
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 5.1e-35 151.0 102 72.5
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 5.1e-35 151.0 103 73.8
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 6.6e-35 150.6 103 72.8
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.1e-34 149.8 100 74.0
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.9e-34 149.1 103 72.8
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 2.5e-34 148.7 102 74.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 103 71.8
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.3e-34 147.9 102 71.6
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 5.6e-34 147.5 103 72.8
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 5.6e-34 147.5 99 72.7
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 7.3e-34 147.1 94 75.5
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 9.5e-34 146.7 102 70.6
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.2e-33 146.4 102 71.6
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 1.2e-33 146.4 99 73.7
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.6e-33 146.0 103 70.9
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 2.8e-33 145.2 98 73.5
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 3.6e-33 144.8 94 75.5
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 4.7e-33 144.4 99 72.7
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 4.7e-33 144.4 102 69.6
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 6.2e-33 144.1 99 70.7
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 6.2e-33 144.1 103 70.9
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 8.1e-33 143.7 99 74.7
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 67.0
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 3.1e-32 141.7 103 68.9
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 67.3
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 5.2e-32 141.0 102 68.6
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 5.2e-32 141.0 102 66.7
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 6.8e-32 140.6 101 68.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 6.8e-32 140.6 101 68.3
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 6.8e-32 140.6 101 68.3
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 6.8e-32 140.6 99 70.7
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 8.9e-32 140.2 100 66.0
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 1.2e-31 139.8 103 68.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.5e-31 139.4 101 66.3
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 2.0e-31 139.0 100 70.0
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.0e-31 139.0 101 67.3
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 2.0e-31 139.0 103 67.0
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 3.4e-31 138.3 97 68.0
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 4.4e-31 137.9 103 68.0
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 4.4e-31 137.9 103 67.0
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 5.8e-31 137.5 99 68.7
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 5.8e-31 137.5 102 66.7
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 5.8e-31 137.5 99 69.7
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 5.8e-31 137.5 103 66.0
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 7.5e-31 137.1 103 66.0
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 9.9e-31 136.7 103 65.0
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 9.9e-31 136.7 103 65.0
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 9.9e-31 136.7 103 66.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 9.9e-31 136.7 102 66.7
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.3e-30 136.3 100 68.0
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 2.2e-30 135.6 99 69.7
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 2.2e-30 135.6 100 66.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 2.9e-30 135.2 99 69.7
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.9e-30 135.2 103 64.1
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.7e-30 134.8 99 69.7
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 3.7e-30 134.8 103 65.0
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 6.4e-30 134.0 100 67.0
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.4e-29 132.9 98 68.4
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.4e-29 132.9 98 68.4
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 3.2e-29 131.7 96 68.8
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 4.1e-29 131.3 103 67.0
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 2.7e-28 128.6 99 69.7
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 7.8e-28 127.1 103 73.8
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 7.8e-28 127.1 99 68.7
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.0e-27 126.7 103 61.2
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 1.3e-27 126.3 98 64.3
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.3e-27 126.3 99 68.7
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.1e-26 123.2 99 67.7
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.1e-26 123.2 99 67.7
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 2.0e-23 112.5 62 91.9
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 5.8e-23 110.9 105 61.9
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 7.6e-23 110.5 104 62.5
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.3e-22 109.8 160 41.9
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.7e-22 109.4 74 68.9
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.2e-22 109.0 77 63.6
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 4.2e-21 104.8 72 68.1
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 1.2e-20 103.2 73 63.0
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 6.0e-20 100.9 69 63.8
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 1.0e-19 100.1 81 61.7
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.3e-19 99.8 73 67.1
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.7e-19 99.4 73 60.3
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.3e-19 99.0 69 63.8
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 2.3e-19 99.0 73 58.9
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.6e-17 91.7 90 53.3
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 4.8e-17 91.3 86 57.0
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 9.9e-15 83.6 84 53.6
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 2.9e-14 82.0 75 65.3
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 6.4e-14 80.9 54 74.1
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 6.0e-12 74.3 98 48.0
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 5.1e-11 71.2 83 45.8
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 7.3e-10 67.4 58 53.4
BolC9t55587H Brassica oleracea HOM05D005227 ORTHO05D006379 9.9e-07 57.0 32 90.6


User provided reference genes

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