Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 5.0e-51 204.1 103 100.0
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 6.4e-46 187.2 120 82.5
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 5.4e-45 184.1 136 74.3
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.6e-44 182.6 136 73.5
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.6e-44 182.6 136 73.5
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.6e-44 182.6 136 73.5
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.0e-44 182.2 149 69.1
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 2.7e-44 181.8 111 82.9
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 6.0e-44 180.6 136 72.8
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 6.0e-44 180.6 113 81.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.7e-43 179.1 136 72.1
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.3e-43 178.7 136 69.9
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.3e-43 178.7 136 72.8
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.3e-43 178.7 136 70.6
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 3.0e-43 178.3 136 69.9
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.0e-43 178.3 136 69.9
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 6.6e-43 177.2 136 69.9
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 6.6e-43 177.2 136 69.9
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.6e-43 177.2 136 69.1
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.6e-43 177.2 136 69.1
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 6.6e-43 177.2 136 69.1
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 6.6e-43 177.2 136 71.3
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 8.6e-43 176.8 137 68.6
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.9e-42 175.6 136 69.1
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.9e-42 175.6 136 69.1
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 2.5e-42 175.3 136 69.9
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.5e-42 175.3 103 83.5
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.5e-42 175.3 136 71.3
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 2.5e-42 175.3 136 69.9
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 3.3e-42 174.9 136 69.1
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 3.3e-42 174.9 136 69.1
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 4.3e-42 174.5 136 67.6
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.3e-42 174.5 136 67.6
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 5.6e-42 174.1 136 69.1
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 7.3e-42 173.7 136 67.6
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 7.3e-42 173.7 136 68.4
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 7.3e-42 173.7 136 69.1
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 7.3e-42 173.7 137 67.9
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 9.5e-42 173.3 136 68.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.2e-41 172.9 136 66.9
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 1.2e-41 172.9 128 73.4
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.6e-41 172.6 136 66.9
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.6e-41 172.6 138 67.4
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.6e-41 172.6 136 66.9
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.6e-41 172.6 138 67.4
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 2.1e-41 172.2 136 67.6
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.1e-41 172.2 138 67.4
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.8e-41 171.8 136 68.4
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 3.6e-41 171.4 136 66.9
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 3.6e-41 171.4 136 66.9
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 4.7e-41 171.0 136 66.9
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 4.7e-41 171.0 127 70.1
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 8.0e-41 170.2 136 66.9
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.1e-40 169.9 136 66.2
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.1e-40 169.9 137 66.4
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.4e-40 169.5 136 66.2
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 2.3e-40 168.7 136 66.2
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 3.1e-40 168.3 136 64.7
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 4.0e-40 167.9 136 64.0
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 5.2e-40 167.5 136 64.0
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.2e-39 166.4 136 66.2
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.5e-39 166.0 159 59.1
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 3.4e-39 164.9 139 66.9
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 3.4e-39 164.9 136 65.4
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.4e-39 164.5 152 63.8
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 4.4e-39 164.5 116 72.4
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 9.8e-39 163.3 136 65.4
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.3e-38 162.9 153 58.2
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.9e-38 161.8 148 60.8
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 8.3e-38 160.2 136 64.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.1e-37 159.8 136 63.2
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.1e-37 159.8 136 63.2
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.1e-37 159.8 136 63.2
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 2.4e-37 158.7 169 56.8
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.2e-37 158.3 136 63.2
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.2e-37 158.3 110 73.6
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 3.2e-37 158.3 137 65.0
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 9.2e-37 156.8 172 52.9
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 9.2e-37 156.8 136 61.8
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 7.8e-36 153.7 140 60.7
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.7e-35 152.5 189 49.2
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.5e-34 148.7 117 68.4
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 3.3e-34 148.3 136 56.6
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 7.3e-34 147.1 136 55.9
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 3.6e-33 144.8 73 98.6
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 3.6e-33 144.8 73 98.6
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 3.6e-33 144.8 136 55.1
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 6.8e-32 140.6 93 77.4
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.2e-31 139.8 73 94.5
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.2e-31 139.8 73 94.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.2e-31 139.8 73 94.5
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.2e-31 139.8 73 94.5
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.0e-31 139.0 120 63.3
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 4.4e-31 137.9 83 81.9
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 5.8e-31 137.5 73 89.0
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 7.5e-31 137.1 73 89.0
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 9.9e-31 136.7 80 82.5
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.3e-30 136.3 73 89.0
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.3e-30 136.3 73 89.0
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-30 136.0 73 90.4
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-30 136.0 73 90.4
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-30 136.0 73 90.4
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.7e-30 136.0 73 89.0
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 3.7e-30 134.8 73 89.0
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 3.7e-30 134.8 73 87.7
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 6.4e-30 134.0 73 87.7
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.4e-30 134.0 73 87.7
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 8.3e-30 133.7 80 81.2
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 1.9e-29 132.5 73 86.3
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.9e-29 132.5 73 86.3
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.9e-29 132.5 73 86.3
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.9e-29 132.5 73 86.3
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.9e-29 132.5 73 86.3
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 5.4e-29 131.0 73 84.9
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 7.1e-29 130.6 73 83.6
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 7.1e-29 130.6 73 84.9
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 9.2e-29 130.2 73 84.9
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.2e-28 129.8 155 45.8
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.6e-28 129.4 73 83.6
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.6e-28 129.4 88 71.6
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.7e-28 128.6 73 82.2
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.5e-28 128.3 73 82.2
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 3.5e-28 128.3 77 83.1
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 3.5e-28 128.3 82 74.4
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 4.6e-28 127.9 73 80.8
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.6e-28 127.9 73 83.6
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.0e-27 126.7 73 82.2
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 1.0e-27 126.7 73 82.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 1.3e-27 126.3 91 70.3
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.3e-27 126.3 73 79.5
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 4.3e-26 121.3 70 78.6
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 7.3e-26 120.6 110 60.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.1e-21 106.7 57 91.2
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 1.4e-21 106.3 56 92.9
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 3.9e-19 98.2 81 53.1
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.6e-17 92.8 47 95.7
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.4e-16 89.7 142 35.9
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 2.6e-15 85.5 46 87.0
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 3.4e-15 85.1 45 88.9
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 4.9e-14 81.3 128 36.7
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 5.4e-13 77.8 133 34.6
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.2e-12 76.6 80 57.5
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 5.1e-11 71.2 80 55.0
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.9e-10 69.3 88 46.6
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 3.6e-09 65.1 87 46.0
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.4e-08 63.2 33 87.9
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 2.4e-08 62.4 45 73.3
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 2.4e-08 62.4 45 73.3
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 2.4e-08 62.4 45 73.3
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 3.1e-08 62.0 30 96.7
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 4.0e-08 61.6 33 87.9
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 5.3e-08 61.2 45 68.9
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 6.9e-08 60.8 33 84.8
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 6.9e-08 60.8 45 68.9
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 9.0e-08 60.5 45 71.1
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 9.0e-08 60.5 45 71.1
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 9.0e-08 60.5 29 96.6


User provided reference genes

Program Settings