Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1366.7 705 100.0
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1350.9 705 98.2
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1350.5 705 98.0
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1347.8 705 97.9
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1345.5 705 97.7
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1344.7 705 97.7
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1312.0 706 94.8
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1300.0 703 93.7
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1279.2 704 91.6
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1276.9 703 91.7
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1269.2 706 91.1
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1254.2 702 91.0
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1252.7 702 90.9
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1249.6 702 91.0
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1249.6 702 91.0
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1249.6 702 91.0
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1239.6 703 90.2
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 0.0e+00 1229.2 704 89.1
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1227.6 701 89.7
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1134.8 698 80.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 700 81.3
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1125.9 700 80.7
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1123.2 701 80.9
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1123.2 704 81.1
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1122.8 702 80.2
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1122.5 700 80.4
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1122.1 699 81.4
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1121.7 700 80.9
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 701 80.9
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1119.4 701 80.5
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1118.6 700 80.1
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1117.4 703 80.1
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1117.1 701 80.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1116.7 703 79.7
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1115.9 701 80.2
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1115.1 700 80.0
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 699 81.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1113.6 703 80.1
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1113.2 708 79.5
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1112.8 701 79.0
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1112.8 702 79.9
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1112.1 703 79.2
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1111.7 701 79.6
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1110.5 699 80.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 699 81.1
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1108.2 700 80.0
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1107.8 701 79.0
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1107.0 701 79.0
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1105.9 697 79.5
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 696 79.9
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 699 79.7
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1100.9 702 79.1
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1100.5 706 80.3
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1099.7 700 79.4
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 699 78.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1095.5 701 78.9
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1094.3 699 78.3
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1094.3 703 78.4
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1093.6 699 79.5
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1092.4 701 79.3
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1092.4 699 79.4
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1090.9 697 78.5
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 701 78.9
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 699 78.5
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 699 79.1
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 701 78.2
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 699 77.3
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 699 77.4
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1082.4 687 80.1
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1081.2 727 75.8
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1079.7 699 78.0
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 9.6e-312 1072.8 700 76.6
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 4.3e-311 1070.8 698 76.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 2.8e-310 1068.1 699 77.8
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 2.8e-310 1068.1 699 77.8
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.4e-309 1065.8 697 76.8
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.4e-309 1065.1 699 75.8
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.2e-306 1054.7 696 76.3
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.5e-306 1053.9 701 77.5
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.0e-304 1049.7 700 77.1
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 8.7e-304 1046.6 660 80.2
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.9e-303 1045.4 706 76.9
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 7.4e-303 1043.5 689 77.1
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.3e-302 1042.7 702 76.6
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 1.3e-302 1042.7 703 77.2
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 3.1e-301 1038.1 678 78.0
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.3e-299 1032.7 697 75.9
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.8e-296 1022.3 730 73.2
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 6.7e-296 1020.4 703 73.8
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.5e-295 1019.2 697 75.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.8e-294 1014.2 705 73.8
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 3.1e-293 1011.5 657 79.1
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.9e-292 1007.3 695 73.4
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 8.4e-291 1003.4 720 73.6
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.1e-290 1003.0 658 77.2
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 7.9e-289 996.9 616 81.5
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.1e-287 993.0 696 71.7
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 2.8e-286 988.4 616 81.3
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.5e-284 982.6 685 75.0
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 8.5e-283 976.9 692 74.0
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 8.8e-280 966.8 699 73.1
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.8e-278 961.1 648 75.0
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.8e-272 942.6 587 81.6
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 9.1e-269 930.2 703 69.6
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.6e-265 918.3 698 67.6
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 9.1e-261 903.7 543 84.0
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.7e-260 902.1 728 66.6
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.7e-257 892.1 570 80.2
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 6.8e-248 860.9 703 64.7
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 6.1e-241 837.8 702 65.1
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.4e-239 831.6 724 63.7
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.9e-236 821.2 573 71.9
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.0e-235 820.5 537 78.8
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.6e-225 786.6 526 75.1
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.1e-217 759.6 450 85.3
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.3e-211 739.6 693 54.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.3e-203 713.8 629 58.0
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 4.3e-194 682.2 612 61.4
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.1e-189 664.8 552 66.1
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.2e-185 651.7 402 82.3
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.5e-183 647.1 392 83.4
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.1e-173 614.4 629 50.1
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.3e-169 600.9 661 47.7
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.4e-163 580.9 664 47.9
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.5e-159 565.8 521 60.8
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.1e-148 530.4 395 72.2
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.1e-144 516.2 636 43.7
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-143 513.8 644 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.8e-139 500.7 642 43.0
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.1e-133 481.5 628 43.6
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 4.6e-119 433.0 709 39.4
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.6e-119 433.0 307 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.0e-106 391.0 401 51.9
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.2e-105 387.5 248 81.0
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.7e-95 354.0 399 53.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 4.6e-79 300.1 214 65.9
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.8e-68 264.2 224 64.7
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.9e-54 217.2 123 84.6
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.3e-53 213.8 171 69.0
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.0e-39 166.4 133 59.4
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.5e-29 133.3 78 83.3
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 9.7e-29 132.9 101 63.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 8.5e-25 119.8 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 6.1e-23 113.6 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 3.7e-20 104.4 92 57.6
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 3.6e-15 87.8 56 75.0
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 1.7e-12 79.0 57 61.4
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 9.5e-08 63.2 55 52.7
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 9.5e-08 63.2 55 52.7
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.3e-06 58.5 30 76.7


User provided reference genes

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