Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30820 Brassica carinata HOM05D008115 ORTHO05D010112 1.6e-98 362.8 197 100.0
BcaC04g21681 Brassica carinata HOM05D008115 ORTHO05D010112 5.2e-81 304.7 190 91.6
A09p22550 Brassica napus HOM05D008115 ORTHO05D010112 8.9e-81 303.9 189 91.5
Thhalv10001038m.g Eutrema salsugineum HOM05D008115 ORTHO05D010112 3.6e-74 282.0 192 81.2
Sp2g11610 Schrenkiella parvula HOM05D008115 ORTHO05D010112 6.2e-74 281.2 191 82.2
C02p47870 Brassica napus HOM05D008115 ORTHO05D010112 4.4e-72 275.0 193 84.5
BolC2t10820H Brassica oleracea HOM05D008115 ORTHO05D010112 4.4e-72 275.0 193 84.5
BraA02t08049Z Brassica rapa HOM05D008115 ORTHO05D010112 4.4e-72 275.0 192 85.9
Carub.0008s0112 Capsella rubella HOM05D008115 ORTHO05D010112 5.8e-72 274.6 196 78.6
BcaC03g16890 Brassica carinata HOM05D008115 ORTHO05D010112 1.7e-71 273.1 192 84.4
A02p30340 Brassica napus HOM05D008115 ORTHO05D010112 7.8e-69 264.2 192 82.3
CARHR174700 Cardamine hirsuta HOM05D008115 ORTHO05D010112 3.0e-68 262.3 192 75.5
C09p28900 Brassica napus HOM05D008115 ORTHO05D010112 3.4e-64 248.8 157 90.4
AL8G11540 Arabidopsis lyrata HOM05D008115 ORTHO05D010112 7.6e-64 247.7 198 73.2
AT5G46795 Arabidopsis thaliana HOM05D008115 ORTHO05D010112 9.9e-64 247.3 195 73.3
C07p30110 Brassica napus HOM05D008115 ORTHO05D010112 1.7e-60 236.5 191 73.8
BolC7t43551H Brassica oleracea HOM05D008115 ORTHO05D010112 1.7e-60 236.5 191 73.8
BcaC06g34346 Brassica carinata HOM05D008115 ORTHO05D010112 5.1e-60 235.0 190 73.7
Aa31LG9G6090 Aethionema arabicum HOM05D008115 ORTHO05D010112 1.7e-47 193.4 132 76.5
BraA09t37861Z Brassica rapa HOM05D008115 ORTHO05D010112 2.7e-45 186.0 192 65.6
A06p45650 Brassica napus HOM05D008115 ORTHO05D010112 2.1e-37 159.8 103 81.6
BolC9t55752H Brassica oleracea HOM05D008115 ORTHO05D010112 2.2e-31 139.8 78 89.7
THA.LOC104806705 Tarenaya hassleriana HOM05D008115 ORTHO05D010112 1.4e-30 137.1 135 57.8
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 2.6e-19 99.8 192 36.5
Thecc.03G228100 Theobroma cacao HOM05D008115 ORTHO05D010112 3.7e-18 95.9 202 37.1
Duzib205G0809 Durio zibethinus HOM05D008115 ORTHO05D010112 8.2e-18 94.7 200 37.0
Prupe.5G036900 Prunus persica HOM05D008115 ORTHO05D010112 1.4e-17 94.0 200 39.0
Ciclev10012855m.g Citrus clementina HOM05D008115 ORTHO05D010112 2.4e-17 93.2 201 36.8
PGR042G2453 Punica granatum HOM05D008115 ORTHO05D010112 2.0e-16 90.1 201 31.8
Gohir.D08G177100 Gossypium hirsutum HOM05D008115 ORTHO05D010112 3.5e-16 89.4 194 36.6
Gorai.004G185300 Gossypium raimondii HOM05D008115 ORTHO05D010112 3.5e-16 89.4 194 36.6
Potri.003G091600 Populus trichocarpa HOM05D008115 ORTHO05D010112 3.5e-16 89.4 197 38.1
Gohir.A08G156700 Gossypium hirsutum HOM05D008115 ORTHO05D010112 7.7e-16 88.2 186 38.2
CiPaw.12G063600 Carya illinoinensis HOM05D008115 ORTHO05D010112 1.3e-15 87.4 209 37.3
Lj2g0018003 Lotus japonicus HOM05D008115 ORTHO05D010112 6.5e-15 85.1 202 36.1
Manes.15G181340 Manihot esculenta HOM05D008115 ORTHO05D010112 7.2e-14 81.6 144 41.0
QL12p005248 Quercus lobata HOM05D008115 ORTHO05D010112 7.2e-14 81.6 201 35.8
QL12p005415 Quercus lobata HOM05D008115 ORTHO05D010112 7.2e-14 81.6 201 35.8
CsaV3_3G049200 Cucumis sativus L. HOM05D008115 ORTHO05D010112 9.4e-14 81.3 94 50.0
FAN18G3637 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.2e-13 80.9 127 43.3
FAN04G2182 Fragaria x ananassa HOM05D008115 ORTHO05D010112 3.6e-13 79.3 127 42.5
Medtr5g030520 Medicago truncatula HOM05D008115 ORTHO05D010112 6.1e-13 78.6 198 34.3
FAN08G1703 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.4e-12 77.4 131 41.2
Psat2g136120 Pisum sativum HOM05D008115 ORTHO05D010112 1.8e-12 77.0 200 31.0
FAN13G1458 Fragaria x ananassa HOM05D008115 ORTHO05D010112 5.2e-12 75.5 223 36.3
Sed0022703 Sechium edule HOM05D008115 ORTHO05D010112 5.2e-12 75.5 194 33.5
Aqoxy3G02357 Aquilegia oxysepala HOM05D008115 ORTHO05D010112 8.8e-12 74.7 183 35.0
Dinv28956 Davidia involucrata HOM05D000381 ORTHO05D010112 8.8e-12 74.7 120 38.3
GSVIVG01013162001 Vitis vinifera HOM05D008115 ORTHO05D010112 1.5e-11 73.9 192 33.9
Glyma.09G204000 Glycine max HOM05D008115 ORTHO05D010112 7.4e-11 71.6 195 32.3
arahy.Tifrunner.gnm1.ann1.6THG3J Arachis hypogaea HOM05D008115 ORTHO05D010112 2.4e-09 66.6 195 32.8
arahy.Tifrunner.gnm1.ann1.FLG01L Arachis hypogaea HOM05D008115 ORTHO05D010112 2.4e-09 66.6 195 32.8
RcHm_v2.0_Chr7g0209671 Rosa chinensis HOM05D008115 ORTHO05D010112 7.0e-09 65.1 86 44.2
MELO3C030366.2 Cucumis melo HOM05D008115 ORTHO05D010112 1.6e-08 63.9 80 43.8
EL10Ac5g12123 Beta vulgaris HOM05D008115 ORTHO05D010112 4.5e-08 62.4 137 31.4
Sopen02g017350 Solanum pennellii HOM05D008614 ORTHO05D010420 5.9e-08 62.0 84 38.1
TPR.G15446 Trifolium pratense HOM05D008115 ORTHO05D010112 7.7e-08 61.6 185 28.1
DCAR_005627 Daucus carota HOM05D001142 ORTHO05D003453 1.7e-07 60.5 213 31.0
TWI15G1224 Tripterygium wilfordii HOM05D008115 ORTHO05D010112 2.2e-07 60.1 87 42.5
VMungo1215G1226 Vigna mungo HOM05D008115 ORTHO05D010112 2.2e-07 60.1 196 30.1
AUR62018718 Chenopodium quinoa HOM05D008115 ORTHO05D010112 6.5e-07 58.5 186 30.6
Phvul.002G142000 Phaseolus vulgaris HOM05D008115 ORTHO05D010112 6.5e-07 58.5 202 29.2
FvH4_5g22030 Fragaria vesca HOM05D008115 ORTHO05D010112 1.9e-06 57.0 66 51.5
ECA246G5266 Erigeron canadensis HOM05D038245 ORTHO05D010112 5.5e-06 55.5 97 37.1


User provided reference genes

Program Settings