Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 5.7e-81 304.3 164 100.0
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 5.0e-69 264.6 161 85.1
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 5.0e-69 264.6 161 85.1
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 5.5e-68 261.2 164 82.3
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 5.5e-68 261.2 164 82.3
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 3.3e-65 251.9 148 85.8
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 7.5e-65 250.8 149 85.9
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 7.5e-65 250.8 149 85.9
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 7.5e-65 250.8 148 84.5
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-63 246.5 147 84.4
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.1e-63 245.4 144 85.4
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.0e-61 240.4 145 82.1
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.8e-58 229.6 141 79.4
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 2.3e-58 229.2 141 78.7
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.3e-58 229.2 142 81.7
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.0e-58 228.8 147 78.2
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.7e-54 215.7 140 79.3
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.9e-53 212.2 144 72.2
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 3.5e-46 188.7 94 93.6
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 7.8e-46 187.6 143 67.8
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-45 187.2 144 66.7
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.0e-45 187.2 143 62.2
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.7e-45 186.4 164 59.8
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 5.0e-45 184.9 140 66.4
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 6.6e-45 184.5 140 66.4
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 6.6e-45 184.5 140 66.4
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 6.6e-45 184.5 140 64.3
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-44 183.3 140 67.1
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.9e-44 183.0 140 66.4
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.9e-44 183.0 140 66.4
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 3.3e-44 182.2 140 66.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 4.3e-44 181.8 140 65.7
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 4.3e-44 181.8 140 66.4
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.6e-44 181.4 140 65.7
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.2e-43 180.3 147 66.0
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.8e-43 179.1 147 64.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.3e-40 170.2 133 62.4
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.7e-40 168.7 127 64.6
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 4.9e-40 168.3 137 64.2
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 4.9e-40 168.3 137 64.2
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.1e-39 167.2 138 60.1
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.4e-39 166.8 144 61.8
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.2e-39 165.6 128 63.3
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 3.2e-39 165.6 127 64.6
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 5.4e-39 164.9 137 63.5
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 7.0e-39 164.5 128 62.5
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 9.2e-39 164.1 137 60.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.6e-38 163.3 128 60.9
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.6e-37 157.9 139 54.0
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 7.3e-36 154.5 127 61.4
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 7.3e-36 154.5 127 61.4
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 9.5e-36 154.1 127 62.2
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 9.5e-36 154.1 127 62.2
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 9.5e-36 154.1 127 62.2
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-34 150.2 126 60.3
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-31 140.6 127 56.7
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.3e-28 128.6 136 48.5
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.1e-27 126.3 141 45.4
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 1.8e-26 123.2 132 47.0
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 2.3e-26 122.9 141 41.8
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 2.3e-26 122.9 143 42.7
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 5.2e-26 121.7 147 42.2
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.5e-25 120.2 145 42.8
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 2.0e-25 119.8 145 42.8
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 2.0e-25 119.8 157 39.5
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 4.4e-25 118.6 146 41.8
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 4.4e-25 118.6 132 45.5
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.8e-25 118.2 134 45.5
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 5.8e-25 118.2 134 45.5
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 7.5e-25 117.9 127 47.2
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 9.9e-25 117.5 143 42.7
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.7e-24 116.7 140 47.1
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.7e-24 116.7 138 43.5
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.2e-24 116.3 139 41.0
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.2e-24 116.3 141 46.8
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 2.2e-24 116.3 141 41.1
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 2.9e-24 115.9 138 42.8
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.9e-24 115.9 132 47.0
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.9e-24 115.9 140 44.3
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 4.9e-24 115.2 136 41.2
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.9e-24 115.2 139 42.4
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.9e-24 115.2 135 43.0
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 4.9e-24 115.2 134 43.3
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 6.4e-24 114.8 137 43.8
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 6.4e-24 114.8 142 40.1
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.4e-24 114.8 151 39.7
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 8.3e-24 114.4 143 41.3
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.1e-23 114.0 155 36.8
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.1e-23 114.0 133 43.6
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.4e-23 113.6 140 42.9
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.4e-23 113.6 138 42.8
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.9e-23 113.2 142 43.0
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.4e-23 112.8 143 42.0
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.4e-23 112.8 131 42.7
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 3.2e-23 112.5 149 39.6
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.2e-23 112.5 136 39.7
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 4.1e-23 112.1 135 41.5
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 5.4e-23 111.7 151 40.4
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 5.4e-23 111.7 143 42.0
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 7.1e-23 111.3 142 45.1
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 7.1e-23 111.3 151 38.4
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 9.2e-23 110.9 85 65.9
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 9.2e-23 110.9 137 43.8
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.2e-22 110.5 141 40.4
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.6e-22 110.2 133 40.6
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.6e-22 110.2 150 38.0
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.1e-22 109.8 139 38.8
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.1e-22 109.8 139 38.8
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 2.1e-22 109.8 138 39.1
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 2.1e-22 109.8 124 46.0
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 2.7e-22 109.4 140 42.1
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 3.5e-22 109.0 144 41.0
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 3.5e-22 109.0 141 46.1
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 4.6e-22 108.6 131 43.5
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.0e-22 108.2 129 41.9
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.0e-21 107.5 140 41.4
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.0e-21 107.5 129 45.0
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.0e-21 107.5 144 41.0
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 1.0e-21 107.5 143 39.2
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.7e-21 106.7 125 41.6
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.7e-21 106.7 143 37.8
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.0e-21 105.9 136 40.4
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 3.0e-21 105.9 132 41.7
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 3.0e-21 105.9 137 42.3
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 3.9e-21 105.5 136 44.1
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 3.9e-21 105.5 142 43.0
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 5.1e-21 105.1 141 39.0
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 5.1e-21 105.1 144 40.3
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 6.6e-21 104.8 136 39.0
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 6.6e-21 104.8 139 41.0
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 6.6e-21 104.8 138 39.1
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 6.6e-21 104.8 147 44.2
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 6.6e-21 104.8 142 39.4
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 8.6e-21 104.4 141 39.0
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 8.6e-21 104.4 144 38.9
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 8.6e-21 104.4 144 38.9
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 8.6e-21 104.4 128 42.2
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 8.6e-21 104.4 134 39.6
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.9e-20 103.2 142 38.7
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 1.9e-20 103.2 148 37.8
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.9e-20 103.2 142 38.7
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.9e-20 103.2 134 41.8
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 2.5e-20 102.8 144 38.9
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 2.5e-20 102.8 138 41.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.5e-20 102.8 142 40.8
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.5e-20 102.8 136 44.1
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.3e-20 102.4 136 44.1
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.3e-20 102.4 133 40.6
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 4.3e-20 102.1 140 42.1
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.3e-20 102.1 133 40.6
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 9.5e-20 100.9 139 41.7
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.2e-19 100.5 130 40.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.6e-19 100.1 137 39.4
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 2.1e-19 99.8 142 37.3
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.8e-19 99.4 140 40.7
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 3.6e-19 99.0 133 38.3
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 8.1e-19 97.8 136 39.0
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.1e-18 97.4 131 39.7
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.8e-18 96.7 130 42.3
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.8e-18 96.7 136 39.0
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 2.4e-18 96.3 130 42.3
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 2.4e-18 96.3 144 35.4
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.1e-18 95.9 146 35.6
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 8.9e-18 94.4 123 39.8
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 8.9e-18 94.4 144 34.0
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.2e-17 94.0 137 39.4
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.5e-17 93.6 128 39.1
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.0e-17 93.2 147 36.1
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 2.0e-17 93.2 159 35.8
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.6e-17 92.8 154 33.8
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 9.9e-17 90.9 143 39.2
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 6.4e-16 88.2 114 40.4
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 8.4e-16 87.8 139 38.1
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.4e-15 87.0 123 39.0
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 6.0e-14 81.6 69 56.5
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 6.0e-14 81.6 145 33.8
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 1.3e-13 80.5 94 47.9
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 3.0e-13 79.3 94 39.4
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.9e-13 79.0 92 45.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 5.1e-13 78.6 88 42.0
Ciclev10012100m.g Citrus clementina HOM05D003328 ORTHO05D003722 4.2e-07 58.9 141 29.1
arahy.Tifrunner.gnm1.ann1.6PTW1V Arachis hypogaea HOM05D003328 ORTHO05D003722 2.7e-06 56.2 117 30.8
arahy.Tifrunner.gnm1.ann1.SVI1UB Arachis hypogaea HOM05D003328 ORTHO05D003722 2.7e-06 56.2 117 30.8
COL.COLO4_19736 Corchorus olitorius HOM05D003328 ORTHO05D003722 3.5e-06 55.8 115 31.3
Glyma.08G251500 Glycine max HOM05D003328 ORTHO05D003722 3.5e-06 55.8 118 32.2
Peaxi162Scf00020g02335 Petunia axillaris HOM05D003328 ORTHO05D003722 3.5e-06 55.8 113 31.9
Glyma.18G274200 Glycine max HOM05D003328 ORTHO05D003722 6.0e-06 55.1 119 31.1
Glyma.19G035600 Glycine max HOM05D003328 ORTHO05D003722 6.0e-06 55.1 117 30.8


User provided reference genes

Program Settings